View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_17 (Length: 407)
Name: NF3550_low_17
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_17 |
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| [»] scaffold0010 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0010 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 251857 - 251451
Alignment:
| Q |
1 |
gatggacattaagtccgttagcattcaactatgaaccaaattctatttggtcatcttttgaattttgatgacatattttctgttttgagttttgaccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251857 |
gatggacattaagtccgttagcattcaactatgaaccaaattctatttggtcatcttttgaattttgatgacatattttctgttttgagttttgaccatg |
251758 |
T |
|
| Q |
101 |
aatgtggtaccttcgaccttggtcatttcacaacgagtgtattctttccaacaacttcttcagtacgaatagttttatatttatataagcgaggaaacta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
251757 |
aatgtggtaccttcgaccttggtcatttcacaacgagtgtattctttccaacaacttcttcggtaagaatagttttatatttatataagcgaggaaacta |
251658 |
T |
|
| Q |
201 |
ttgcaaagagatgttggagctttaggatgagacaatagttcataccatagttacataatacgcaatttgggttggtacacggtactcgttcagattcgtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
251657 |
ttgcaaagagatgttggagctttaggatgagacaatagttcataccatagttacataatacgcaatttgggttggtacatggtactcgttcagattcgtg |
251558 |
T |
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| Q |
301 |
gtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtacttgtcggtcagtggcggaggcacatagtgccgaggggatgcacttgcc |
400 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
251557 |
gtacgcgacatgagaagaattcggtacgtattggagtatagagctttggtacgtgtcggtcagtggcagaggcacatagtgccgaggggatgcacttgcc |
251458 |
T |
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| Q |
401 |
aaccctc |
407 |
Q |
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||||||| |
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| T |
251457 |
aaccctc |
251451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 41502036 - 41501990
Alignment:
| Q |
361 |
cagtggcggaggcacatagtgccgaggggatgcacttgccaaccctc |
407 |
Q |
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| T |
41502036 |
cagtggcggaggcacatagtgctgaggggatgcacttgccaaccctc |
41501990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 331
Target Start/End: Complemental strand, 29423372 - 29423341
Alignment:
| Q |
300 |
ggtacgcgacatgagaagaattcagtacgtat |
331 |
Q |
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| T |
29423372 |
ggtacgcgacatgagaagaattcagtacgtat |
29423341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 14110179 - 14110129
Alignment:
| Q |
300 |
ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggt |
350 |
Q |
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|||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |
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| T |
14110179 |
ggtacgcggcatgagaagaattcggtatgtacaggggtatagagcttcggt |
14110129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 39052770 - 39052726
Alignment:
| Q |
363 |
gtggcggaggcacatagtgccgaggggatgcacttgccaaccctc |
407 |
Q |
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| T |
39052770 |
gtggcggaggcacatagtgctgaggggatgcacttgccaaccctc |
39052726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 37060031 - 37059973
Alignment:
| Q |
295 |
ttcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtact |
353 |
Q |
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|||| ||| ||| ||||||||||||||| |||||||| ||||||||||||||| ||||| |
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| T |
37060031 |
ttcgcggttcgctacatgagaagaattcggtacgtatgggagtatagagcttcagtact |
37059973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 17593469 - 17593521
Alignment:
| Q |
300 |
ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac |
352 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
17593469 |
ggtacccgacatgagaagaattaggtacgtataggagtatagagtttcggtac |
17593521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 17699995 - 17700047
Alignment:
| Q |
300 |
ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac |
352 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
17699995 |
ggtacccgacatgagaagaattaggtacgtataggagtatagagtttcagtac |
17700047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 33054343 - 33054299
Alignment:
| Q |
360 |
tcagtggcggaggcacatagtgccgaggggatgcacttgccaacc |
404 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
33054343 |
tcagtggcggaggcacatagtactgaggggatgcacttgccaacc |
33054299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 27811386 - 27811331
Alignment:
| Q |
297 |
cgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac |
352 |
Q |
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||||||||||||||||||||||||| |||||| | || ||||||||||||||||| |
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| T |
27811386 |
cgtggtacgcgacatgagaagaattgggtacgtttgggggtatagagcttcggtac |
27811331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 4809521 - 4809452
Alignment:
| Q |
281 |
ggtactcgttcagattcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggt |
350 |
Q |
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|||||| |||| ||| || ||||||||||||||||||||||| |||| | | || ||||||||||||||| |
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| T |
4809521 |
ggtactggttcggatacgcggtacgcgacatgagaagaattcggtacatttgggggtatagagcttcggt |
4809452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 29848672 - 29848724
Alignment:
| Q |
300 |
ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac |
352 |
Q |
| |
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||||| ||||||||||||||||| |||||| ||| ||||||||||||||||| |
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| T |
29848672 |
ggtacacgacatgagaagaattcgatacgtacaggggtatagagcttcggtac |
29848724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 28043492 - 28043443
Alignment:
| Q |
300 |
ggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcgg |
349 |
Q |
| |
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|||||||||||||| || |||||||||| ||| || |||||||||||||| |
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| T |
28043492 |
ggtacgcgacatgaaaataattcagtacatatgggggtatagagcttcgg |
28043443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 404
Target Start/End: Original strand, 29635498 - 29635541
Alignment:
| Q |
361 |
cagtggcggaggcacatagtgccgaggggatgcacttgccaacc |
404 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
29635498 |
cagtggcggaggtacatagtgatgaggggatgcacttgccaacc |
29635541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 16215027 - 16214970
Alignment:
| Q |
295 |
ttcgtggtacgcgacatgagaagaattcagtacgtataggagtatagagcttcggtac |
352 |
Q |
| |
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|||| |||||||||||||||||||||| ||||| ||||| ||||||| |||||||| |
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| T |
16215027 |
ttcgcggtacgcgacatgagaagaatttggtacgcatagggatatagagtttcggtac |
16214970 |
T |
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