View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_18 (Length: 399)
Name: NF3550_low_18
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 47536124 - 47536289
Alignment:
| Q |
18 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||| |
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| T |
47536124 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgcgaa |
47536223 |
T |
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| Q |
118 |
aacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47536224 |
aacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
47536289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 23153275 - 23153109
Alignment:
| Q |
18 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||| |||||| |||||| ||| |
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| T |
23153275 |
gcattaggaattgaatcagttaccataacacccaccaatccaaacttaaacgataaactcacgaaggtcaaactttgatacgaaaactgtaaaatgcgaa |
23153176 |
T |
|
| Q |
118 |
aacctcttcctcgatt-cttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
183 |
Q |
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|||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
23153175 |
aacctcttcctcgattccgtctttcaattcacaaggtatgtaaagttgtgtaatttataaaaggtga |
23153109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 44218303 - 44218464
Alignment:
| Q |
18 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||| |
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| T |
44218303 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgcgaa |
44218402 |
T |
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| Q |
118 |
aacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaag |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44218403 |
aacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaag |
44218464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 21569714 - 21569903
Alignment:
| Q |
18 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||| ||||||| ||| |
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| T |
21569714 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatactaaaacagtaaaacgcgaa |
21569813 |
T |
|
| Q |
118 |
aacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt |
207 |
Q |
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||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21569814 |
aacctcttcctcgattcgtctttcaattcacgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt |
21569903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 42962872 - 42962683
Alignment:
| Q |
18 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaa |
117 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||| |
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| T |
42962872 |
gcattaggaattgaatcagttaagataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgtgaa |
42962773 |
T |
|
| Q |
118 |
aacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt |
207 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42962772 |
aatctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt |
42962683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 371618 - 371428
Alignment:
| Q |
18 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatg-aaaaccgtaaaacatga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||| || |
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| T |
371618 |
gcattaggaattgaatcagttaccataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaaccgtaaaacgcga |
371519 |
T |
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| Q |
117 |
aaacctcttcctcgattcttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
371518 |
aaacctcttcctcgatttttctttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt |
371428 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 370448 - 370332
Alignment:
| Q |
238 |
ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacctcagtgattcttccaaccctatcattagattgctattacta |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
370448 |
ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacctcagtgattc-----------tcattagattgctattacta |
370360 |
T |
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| Q |
338 |
tacaaatctcaaagcttttacataattc |
365 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
370359 |
tacaaatctcaaagcttttacataattc |
370332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 27226051 - 27226017
Alignment:
| Q |
149 |
gtggtatgtaaagttgtgtaatttataaaaggtga |
183 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
27226051 |
gtggtatgtaaagttgtgtaattgataaaaggtga |
27226017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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