View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_low_2 (Length: 933)

Name: NF3550_low_2
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_low_2
NF3550_low_2
[»] chr2 (16 HSPs)
chr2 (224-918)||(10586967-10587662)
chr2 (9-124)||(10587733-10587847)
chr2 (671-742)||(41702119-41702190)
chr2 (675-742)||(30602340-30602407)
chr2 (675-740)||(2626038-2626103)
chr2 (685-742)||(3208433-3208490)
chr2 (685-742)||(4413255-4413312)
chr2 (704-742)||(9685604-9685642)
chr2 (668-742)||(17344482-17344556)
chr2 (668-742)||(41868096-41868170)
chr2 (685-742)||(27494172-27494229)
chr2 (685-742)||(28224861-28224918)
chr2 (700-742)||(20143134-20143176)
chr2 (701-742)||(15515336-15515377)
chr2 (685-742)||(18745143-18745200)
chr2 (685-738)||(38723985-38724038)
[»] chr8 (10 HSPs)
chr8 (675-742)||(38815145-38815212)
chr8 (668-742)||(18804457-18804531)
chr8 (685-742)||(22589525-22589582)
chr8 (675-729)||(3863162-3863216)
chr8 (685-741)||(18596789-18596845)
chr8 (678-742)||(24320191-24320255)
chr8 (675-734)||(3825487-3825546)
chr8 (675-742)||(12751035-12751102)
chr8 (704-742)||(37514101-37514139)
chr8 (685-742)||(44337201-44337257)
[»] chr3 (8 HSPs)
chr3 (685-742)||(26772619-26772676)
chr3 (685-742)||(32546656-32546713)
chr3 (680-742)||(39583418-39583480)
chr3 (685-742)||(44694-44751)
chr3 (675-742)||(8591992-8592059)
chr3 (668-739)||(53785553-53785624)
chr3 (676-741)||(3643005-3643070)
chr3 (701-742)||(26856951-26856992)
[»] chr1 (12 HSPs)
chr1 (685-742)||(5453956-5454013)
chr1 (685-742)||(868590-868647)
chr1 (668-742)||(19035323-19035397)
chr1 (684-742)||(30688417-30688475)
chr1 (685-742)||(7213104-7213161)
chr1 (685-742)||(22346756-22346813)
chr1 (671-742)||(28493520-28493591)
chr1 (668-742)||(21472847-21472921)
chr1 (685-742)||(24177700-24177757)
chr1 (675-739)||(4862182-4862246)
chr1 (669-733)||(50161622-50161686)
chr1 (685-742)||(1114057-1114114)
[»] chr4 (13 HSPs)
chr4 (675-742)||(26521340-26521407)
chr4 (685-742)||(3329857-3329914)
chr4 (685-742)||(31846964-31847021)
chr4 (685-742)||(50001115-50001172)
chr4 (675-742)||(23604941-23605008)
chr4 (687-742)||(39001260-39001315)
chr4 (672-742)||(40392743-40392813)
chr4 (685-742)||(30940921-30940978)
chr4 (675-742)||(25931974-25932041)
chr4 (685-735)||(4419125-4419175)
chr4 (685-742)||(53619447-53619504)
chr4 (675-742)||(12053318-12053385)
chr4 (685-742)||(132246-132303)
[»] scaffold0309 (1 HSPs)
scaffold0309 (668-742)||(5168-5242)
[»] chr7 (12 HSPs)
chr7 (685-742)||(38766185-38766242)
chr7 (685-742)||(38832163-38832220)
chr7 (675-734)||(2520918-2520977)
chr7 (685-742)||(25187120-25187177)
chr7 (685-742)||(45003086-45003143)
chr7 (668-742)||(19277135-19277209)
chr7 (685-742)||(28517476-28517533)
chr7 (700-741)||(45614032-45614073)
chr7 (700-742)||(982825-982867)
chr7 (668-742)||(21327027-21327101)
chr7 (668-742)||(45974788-45974862)
chr7 (686-727)||(40726684-40726725)
[»] chr6 (7 HSPs)
chr6 (685-742)||(17249494-17249551)
chr6 (685-741)||(33220901-33220957)
chr6 (685-741)||(7749342-7749398)
chr6 (675-742)||(34168772-34168839)
chr6 (679-743)||(947956-948020)
chr6 (685-736)||(45816-45867)
chr6 (700-742)||(28625807-28625849)
[»] scaffold0009 (1 HSPs)
scaffold0009 (667-742)||(102949-103024)
[»] chr5 (8 HSPs)
chr5 (685-742)||(33692241-33692298)
chr5 (685-742)||(2917550-2917607)
chr5 (685-742)||(13167099-13167156)
chr5 (685-734)||(27913491-27913540)
chr5 (675-742)||(24113426-24113493)
chr5 (685-727)||(35310309-35310351)
chr5 (668-742)||(42921542-42921616)
chr5 (685-742)||(25663221-25663278)
[»] scaffold0406 (1 HSPs)
scaffold0406 (690-742)||(6754-6806)
[»] scaffold0110 (1 HSPs)
scaffold0110 (668-742)||(47709-47783)


Alignment Details
Target: chr2 (Bit Score: 644; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 224 - 918
Target Start/End: Complemental strand, 10587662 - 10586967
Alignment:
Q  224 gattctaatctttgcaaatatatgtgtttgtagtaatgtatttaatcttgttttttcactatgtggcgtgagttcaaagctaaactacttgtatgttgtg 323  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10587662 gattctaatctttgcaaatatatgtatttttagtaatgtatttaatcttgttttttcactatgtggcgtgagttcaaagctaaactacttgtgtgttgtg 10587563  T
Q  324 caggaagcattttactgattctcagtgctccagttcttgcaattgcatttcttgccattgcatacctaattatttctggggaggatcagcttcctgagta 423  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10587562 caggaagcattttactgattctcagtgctcctgttcttgcaattgcatttcttgccattgcatacctaattatttctggggaggatcagcttcctgagta 10587463  T
Q  424 tgtgatttctacatactttccttatctgtgcattggattaattgaatttaatttgtatacactatcagtgtaaatatccaatcatgtttcattattatgt 523  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10587462 tgtgatttctacatactttccttatctgtgcactggattaattgaatttaatttgtatacactatcagtgtaaatatccaatcatgtttcattattatgt 10587363  T
Q  524 cattttgctatattagttcctaaaatatctctacagatacatatgcaaggagatgcgattgaatgcatctgtagaagttttttacactgagactgagata 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10587362 cattttgctatattagttcctaaaatatctctacagatacatatgcaaggagatgcgattgaatgcatgtgtagaagttttttacactgagactgagata 10587263  T
Q  624 gtgcataccaattaaactcgaattaatttcatcttaaggctttaatatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagc 723  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10587262 gtgcataccaattaaactcgaattaatttcatcttaaggctttaatatatatatatcaaggattacttacacatgaatagaaggcaaacgggcaacaagc 10587163  T
Q  724 tgcgccgctagaccttttttatattgtttttgacatggattttgatggcaggaagaagaattccaagtatccaagatttcgcctatggacttttcctatc 823  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10587162 tacgccgctagaccttttttatattgtttttgacatggattttgatggcaggaagaagaattccaagtatccaagatttcgcctatggacttttcctatc 10587063  T
Q  824 cttataaatggaccatttggagttgtttctgcaacagagctcattggaattgtcatt-ttttagcatatgttatttgggctttctatgcttatact 918  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  10587062 cttataaatggaccatttggggttgtttctgcaacagagctcattggaattgtcatttttttagcttatgttatttgggctttctatgcttatact 10586967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 10587847 - 10587733
Alignment:
Q  9 cagaacctgtgcatggattgttctcaaaatggcttaatttcagcagtgaaacttcctttggaatcacaggtaatacatannnnnnnncttctattttggt 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  10587847 cagaatctgtgcatggattgttctcaaaatggcttaatttcagcagtgaaacttcctttggaatcacaggtaatacata-tttttttcttctattttggt 10587749  T
Q  109 ttcttggtttaaatat 124  Q
    ||||||||||||||||    
T  10587748 ttcttggtttaaatat 10587733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 671 - 742
Target Start/End: Original strand, 41702119 - 41702190
Alignment:
Q  671 tatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||| |||| |||||||    
T  41702119 tatttatatcaaggattacttacacatgaatagaaggcaagtgggcaacaagctgcgccactaggccttttt 41702190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 30602340 - 30602407
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| ||||||||| ||||||||||  ||||||||||||||||| ||||| |||||||    
T  30602340 tatatcaaggattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggccttttt 30602407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 675 - 740
Target Start/End: Complemental strand, 2626103 - 2626038
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttt 740  Q
    ||||||||  |||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||||||    
T  2626103 tatatcaataattaattacacatgaatagaaggcaagcggacaacaagctgcgccgttagaccttt 2626038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 3208490 - 3208433
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||||| ||||||||    
T  3208490 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctaaaccttttt 3208433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 4413312 - 4413255
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || |||||||||||  ||||||||||||||||||||||||||||||    
T  4413312 attatttacacttgaatagaaggcaagtgggcaacaagctgcgccgctagaccttttt 4413255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 704 - 742
Target Start/End: Complemental strand, 9685642 - 9685604
Alignment:
Q  704 aaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  9685642 aaggcaagcgggcaacaagctgcgccgctagaccttttt 9685604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 742
Target Start/End: Original strand, 17344482 - 17344556
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||| ||||| ||  |||| |||||| || ||||||||||| | ||||||||||||||||| |||||||||||    
T  17344482 atatatatatataaatcattatttacacttgaatagaaggcaagccggcaacaagctgcgccgatagaccttttt 17344556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 742
Target Start/End: Complemental strand, 41868170 - 41868096
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||| ||  |||| |||||| || |||||| |||| ||||||||||| |||||||||||| ||||||    
T  41868170 atatatttatataaaccattatttacacttgaatagaaagcaagcgggcaacaagttgcgccgctagatcttttt 41868096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 27494172 - 27494229
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||| ||| |||| |||||| | ||||||||||||||||| |||||||||||    
T  27494172 attacttacatatgaataggaggcaagcaggcaacaagctgcgccgttagaccttttt 27494229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 28224861 - 28224918
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||| ||| |||| || ||| ||||||| |||||||||||||||||||||||    
T  28224861 attacttacaaatgaataggagacaagcgggcaataagctgcgccgctagaccttttt 28224918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 742
Target Start/End: Complemental strand, 20143176 - 20143134
Alignment:
Q  700 atagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||||||| | ||||||| |||||||||||||||||||    
T  20143176 atagaaggcaaacagacaacaagttgcgccgctagaccttttt 20143134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Complemental strand, 15515377 - 15515336
Alignment:
Q  701 tagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||| |||||||| |||||||||||||| |||||    
T  15515377 tagaaggcaaacaggcaacaaactgcgccgctagactttttt 15515336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 18745200 - 18745143
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||| ||| || |||| |||||||||||||||||||||||    
T  18745200 attatttacacttgaatagaagacaagcgagcaataagctgcgccgctagaccttttt 18745143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 738
Target Start/End: Complemental strand, 38724038 - 38723985
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacct 738  Q
    |||||||||||||  |||| |||||| || |||||||||||| |||||||||||    
T  38724038 attacttacacataaataggaggcaagcgagcaacaagctgcaccgctagacct 38723985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 38815145 - 38815212
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||  |||||||    
T  38815145 tatatcaaggattgcttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagccttttt 38815212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 742
Target Start/End: Original strand, 18804457 - 18804531
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||| |||||| ||  |||| |||||| || ||||||||||| | |||||||||||||||||||||||||||||    
T  18804457 atataattatataaaccattatttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagaccttttt 18804531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 22589582 - 22589525
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||| ||||||| |||||||||||||||||||||||||||||||    
T  22589582 attatttacacttgaataaaaggcaagcgggcaacaagctgcgccgctagaccttttt 22589525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 729
Target Start/End: Original strand, 3863162 - 3863216
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgcc 729  Q
    |||||||||||||| ||||||||| |||||| |||||||  ||||||||||||||    
T  3863162 tatatcaaggattaattacacatgaatagaatgcaaacgaccaacaagctgcgcc 3863216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 741
Target Start/End: Complemental strand, 18596845 - 18596789
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacctttt 741  Q
    |||| |||||| || ||||||||||| | | ||||||||||||||||||||||||||    
T  18596845 attatttacacttgaatagaaggcaagctgacaacaagctgcgccgctagacctttt 18596789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 678 - 742
Target Start/End: Original strand, 24320191 - 24320255
Alignment:
Q  678 atcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||| ||||| ||||||| | ||||||| ||||| ||||||||||||| | |||||||||||||    
T  24320191 atcaatgattaattacacacgaatagaagacaaacaggcaacaagctgcactgctagaccttttt 24320255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 734
Target Start/End: Original strand, 3825487 - 3825546
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctag 734  Q
    |||||||||||||| ||||||||  ||| ||| |||||| |||||||| |||||||||||    
T  3825487 tatatcaaggattaattacacataaataaaagacaaacgagcaacaagttgcgccgctag 3825546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 742
Target Start/End: Complemental strand, 12751102 - 12751035
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||| ||||| ||||||||  |||||| |||||| | ||||||||||||| ||||| |||||||    
T  12751102 tatatcaatgattaattacacataaatagaaagcaaactgacaacaagctgcgctgctaggccttttt 12751035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 742
Target Start/End: Original strand, 37514101 - 37514139
Alignment:
Q  704 aaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  37514101 aaggcaagcgggcaacaagctgcgccgttagaccttttt 37514139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 44337201 - 44337257
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| || ||||||||||| |||||| |||||||||    
T  44337201 attacttacacatgaataggaggcaagcgagcaacaagctg-gccgctggaccttttt 44337257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 9e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 26772619 - 26772676
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  26772619 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagaccttttt 26772676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 32546656 - 32546713
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  32546656 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagaccttttt 32546713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 680 - 742
Target Start/End: Complemental strand, 39583480 - 39583418
Alignment:
Q  680 caaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||||||||||||| |||||| |||| | | ||||||| |||||||||||||||||||    
T  39583480 caaggattacttacacatgaatagaaagcaagcagacaacaagttgcgccgctagaccttttt 39583418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 44694 - 44751
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| |||||||||| ||||||||||||||||||||    
T  44694 attatttacacttgaatagaaggcaagcgggcaacaaactgcgccgctagaccttttt 44751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 8591992 - 8592059
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||| |||||||||||||| ||| |||||||  ||| |||||||||||||||| | |||||||    
T  8591992 tatatcaagaattacttacacatgaatataaggcaagtgggtaacaagctgcgccgctgggccttttt 8592059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 739
Target Start/End: Original strand, 53785553 - 53785624
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacctt 739  Q
    |||||| ||||| ||  |||| |||||| || ||||||||||| ||||||||||||| ||||||| ||||||    
T  53785553 atatatatatataaaccattatttacacttgaatagaaggcaagcgggcaacaagctacgccgctggacctt 53785624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 741
Target Start/End: Original strand, 3643005 - 3643070
Alignment:
Q  676 atatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacctttt 741  Q
    ||||||||||||| |||||||   ||||||||||| ||||||| |||||||| || ||| ||||||    
T  3643005 atatcaaggattaattacacaataatagaaggcaagcgggcaataagctgcgtcgttaggcctttt 3643070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 701 - 742
Target Start/End: Complemental strand, 26856992 - 26856951
Alignment:
Q  701 tagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||| || |||||||||||||||||||| |||||||    
T  26856992 tagaaggcaagcgagcaacaagctgcgccgctaggccttttt 26856951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 5453956 - 5454013
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  5453956 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagaccttttt 5454013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 868647 - 868590
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||    
T  868647 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagaccttttt 868590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 742
Target Start/End: Original strand, 19035323 - 19035397
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||| ||||| ||  |||| |||||| || ||||||||||| ||| |||||||||||||||||||||||||||    
T  19035323 atatatatatataaaccattatttacacttgaatagaaggcaatcggacaacaagctgcgccgctagaccttttt 19035397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 742
Target Start/End: Original strand, 30688417 - 30688475
Alignment:
Q  684 gattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||    
T  30688417 gattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggccttttt 30688475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 7213104 - 7213161
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| ||||||||||| |||||||||||||||||||    
T  7213104 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagaccttttt 7213161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 22346756 - 22346813
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| ||| |||||||||||||||||||||||||||    
T  22346756 attatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagaccttttt 22346813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 671 - 742
Target Start/End: Complemental strand, 28493591 - 28493520
Alignment:
Q  671 tatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||| ||  |||| |||||| || ||||||| ||||||| |||||| ||||||||||||||||||||    
T  28493591 tatttatataaatcattatttacacttgaatagaagacaaacggacaacaaactgcgccgctagaccttttt 28493520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 742
Target Start/End: Original strand, 21472847 - 21472921
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||| ||  |||| |||||| || |||||| |||| ||||||| ||| |||||||||||||||||||    
T  21472847 atatatttatataaaccattatttacacttgaatagaatgcaagcgggcaataagttgcgccgctagaccttttt 21472921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 24177757 - 24177700
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||| ||| ||||||||||||||| |||||||||||||||    
T  24177757 attatttacacttgaatagaagacaagcgggcaacaagctgcaccgctagaccttttt 24177700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 675 - 739
Target Start/End: Complemental strand, 4862246 - 4862182
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacctt 739  Q
    ||||||||| | |||||||||||| ||| || ||||  |||||||||||||||||||||| ||||    
T  4862246 tatatcaagaagtacttacacatgaatacaaagcaactgggcaacaagctgcgccgctaggcctt 4862182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 669 - 733
Target Start/End: Complemental strand, 50161686 - 50161622
Alignment:
Q  669 tatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgcta 733  Q
    ||||| |||||||| ||||| ||||| ||  |||||||||||| ||||||||||||| |||||||    
T  50161686 tatatatatatcaatgattaattacaaataaatagaaggcaaaagggcaacaagctgtgccgcta 50161622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 1114114 - 1114057
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||| ||| |||||||||||||| |||| |||||||||||    
T  1114114 attatttacacttgaatagaagccaagcgggcaacaagctgtgccgttagaccttttt 1114057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 26521340 - 26521407
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||| |||||| ||||||| ||||||||    
T  26521340 tatatcaaggattacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaaccttttt 26521407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 3329857 - 3329914
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||||| || |||| |||||| |||||||||||||||||||||||||||||||    
T  3329857 attacttacacgtgaataggaggcaagcgggcaacaagctgcgccgctagaccttttt 3329914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 31846964 - 31847021
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||    
T  31846964 attacttacacatgaataggaggcaagcgggcaacaacctgcgccgctagaccttttt 31847021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 50001172 - 50001115
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||    
T  50001172 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagatcttttt 50001115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 23604941 - 23605008
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||| ||||| ||||||||| ||||||| ||| ||| ||||||| |||||||||||||||||||    
T  23604941 tatatcaatgattatttacacatgaatagaagacaaccggacaacaagttgcgccgctagaccttttt 23605008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 687 - 742
Target Start/End: Original strand, 39001260 - 39001315
Alignment:
Q  687 tacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||    
T  39001260 tacttacacatgaataggaggcaagcgggcaacaaactgcgccgctagaccttttt 39001315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 672 - 742
Target Start/End: Complemental strand, 40392813 - 40392743
Alignment:
Q  672 atttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||| ||  |||| |||||| || ||||||||||| ||| |||||||||||||||||||||||||||    
T  40392813 atttatataaaccattatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagaccttttt 40392743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 30940978 - 30940921
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| |||||||||||||||| ||||||||||||||    
T  30940978 attatttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagaccttttt 30940921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 675 - 742
Target Start/End: Complemental strand, 25932041 - 25931974
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||| |||||||| ||||| ||| ||||||||||| ||||||| || ||||||||| ||||||    
T  25932041 tatatcaagaattacttatacatgaataaaaggcaaacggacaacaagttgtgccgctagatcttttt 25931974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 735
Target Start/End: Original strand, 4419125 - 4419175
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctaga 735  Q
    ||||||| |||||| |||| |||||| ||||||||||||||||||||||||    
T  4419125 attacttgcacatgaataggaggcaagcgggcaacaagctgcgccgctaga 4419175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 53619447 - 53619504
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| ||| ||   |||||||||||||||||||||||||||||    
T  53619447 attacttacacatgaataggaggtaagtaggcaacaagctgcgccgctagaccttttt 53619504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 12053318 - 12053385
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||  ||||||||||||| ||||||||||| | | |||||||||||| |||| | |||||||    
T  12053318 tatatcaagacttacttacacatgaatagaaggcaagcagacaacaagctgcgtcgctcggccttttt 12053385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 132246 - 132303
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||| |||| ||||||||||| |||| |||||||||| ||| || ||||||||    
T  132246 attacttacgcatgaatagaaggcaagcggggaacaagctgcaccgttataccttttt 132303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 668 - 742
Target Start/End: Original strand, 5168 - 5242
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||| ||  |||| |||||| || |||||| |||| |||||||||||||||||||||||||||||||    
T  5168 atatatttatataaaccattatttacacttgaatagaatgcaagcgggcaacaagctgcgccgctagaccttttt 5242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 38766185 - 38766242
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||    
T  38766185 attacttacacatgaataggaggcaagcgggcaacaagctgcgcagctagaccttttt 38766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Original strand, 38832163 - 38832220
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||    
T  38832163 attacttacatatgaataggaggcaagcgggcaacaagctgcgccgctagaccttttt 38832220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 675 - 734
Target Start/End: Complemental strand, 2520977 - 2520918
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctag 734  Q
    |||||||| ||||| ||||||||| ||||||||||| ||| |||||||||||||||||||    
T  2520977 tatatcaaagattaattacacatgaatagaaggcaagcggacaacaagctgcgccgctag 2520918  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 25187177 - 25187120
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| |||||| || ||||||||||| |||||||||||||||||||||||| ||||||    
T  25187177 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagatcttttt 25187120  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 45003143 - 45003086
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| ||| ||| |||||||||||||||||||||||    
T  45003143 attacttacacatgaataggaggcaagcggacaataagctgcgccgctagaccttttt 45003086  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 742
Target Start/End: Original strand, 19277135 - 19277209
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||| ||  |||| |||||  || ||||||||||  ||||||| |||||||||||||||||||||||    
T  19277135 atatatttatataaaccattatttacatttgaatagaaggcaggcgggcaataagctgcgccgctagaccttttt 19277209  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 28517533 - 28517476
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| ||||| ||||||||||||||| | |||||||| |||||    
T  28517533 attacttacacatgaataggaggcagacgggcaacaagctgtgtcgctagactttttt 28517476  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 741
Target Start/End: Complemental strand, 45614073 - 45614032
Alignment:
Q  700 atagaaggcaaacgggcaacaagctgcgccgctagacctttt 741  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  45614073 atagaaggcaagcggacaacaagctgcgccgctagacctttt 45614032  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 742
Target Start/End: Original strand, 982825 - 982867
Alignment:
Q  700 atagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||||||||| |||||||||||| | ||||||||||||||    
T  982825 atagaaggcaaacaggcaacaagctgtgtcgctagaccttttt 982867  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 668 - 742
Target Start/End: Complemental strand, 21327101 - 21327027
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||| ||||| ||  |||| |||||| || ||||||||||| | | ||||||||||||||| |||||||||||    
T  21327101 atatatatatataaaccattatttacacttgaatagaaggcaagcagacaacaagctgcgccgttagaccttttt 21327027  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 668 - 742
Target Start/End: Complemental strand, 45974862 - 45974788
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||| |||||| ||  |||| |||||| || ||||||| ||| ||| |||||||||||||| ||||||||||||    
T  45974862 atataattatataaaccattatttacacttgaatagaagacaagcggacaacaagctgcgccactagaccttttt 45974788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Complemental strand, 40726725 - 40726684
Alignment:
Q  686 ttacttacacatgcatagaaggcaaacgggcaacaagctgcg 727  Q
    ||||||||||||| |||| |||||| ||||||||||||||||    
T  40726725 ttacttacacatgaataggaggcaagcgggcaacaagctgcg 40726684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 17249551 - 17249494
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  17249551 attacttatacatgaataggaggcaagcgggcaacaagctgcgccgctagaccttttt 17249494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 685 - 741
Target Start/End: Complemental strand, 33220957 - 33220901
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacctttt 741  Q
    |||||||||||||| |||| |||||| ||| ||||||||||||||||||||||||||    
T  33220957 attacttacacatgaataggaggcaagcggccaacaagctgcgccgctagacctttt 33220901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 741
Target Start/End: Original strand, 7749342 - 7749398
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacctttt 741  Q
    |||| ||||||||| |||| |||||| ||||||||||||||| ||||||||||||||    
T  7749342 attagttacacatgaataggaggcaagcgggcaacaagctgcaccgctagacctttt 7749398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 34168772 - 34168839
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||| || ||||| ||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||    
T  34168772 tatataaatgattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggccttttt 34168839  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 679 - 743
Target Start/End: Original strand, 947956 - 948020
Alignment:
Q  679 tcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagacctttttt 743  Q
    |||| ||||| ||||||||| ||| ||||||| ||| | ||||||||||||||||| ||||||||    
T  947956 tcaatgattaattacacatgaatataaggcaagcggtctacaagctgcgccgctaggcctttttt 948020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 736
Target Start/End: Complemental strand, 45867 - 45816
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagac 736  Q
    |||| |||||| || |||| |||||| |||||||||||||||||||||||||    
T  45867 attatttacacttgaataggaggcaagcgggcaacaagctgcgccgctagac 45816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 742
Target Start/End: Original strand, 28625807 - 28625849
Alignment:
Q  700 atagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||||| || |||||||||||||||| ||||||    
T  28625807 atagaaggcaaacgggtaataagctgcgccgctagatcttttt 28625849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 667 - 742
Target Start/End: Original strand, 102949 - 103024
Alignment:
Q  667 aatatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||||| ||||| ||  |||| |||||| || ||||||||||| ||||||||||| |||||||||||||||||||    
T  102949 aatatatatatataaaccattatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagaccttttt 103024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 33692298 - 33692241
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||| |||| |||||| | |||||||||||||||||||||| ||||||    
T  33692298 attacttacacatgaataggaggcaagcaggcaacaagctgcgccgctagatcttttt 33692241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 2917607 - 2917550
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    ||||| |||||||| |||| |||||| | |||||||| ||||||||||||||||||||    
T  2917607 attacctacacatgaataggaggcaagcaggcaacaaactgcgccgctagaccttttt 2917550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 13167156 - 13167099
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||| ||||||||| |||| ||||||  ||||||||||||||||||||||| ||||||    
T  13167156 attaattacacatgaataggaggcaagtgggcaacaagctgcgccgctagatcttttt 13167099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 734
Target Start/End: Original strand, 27913491 - 27913540
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctag 734  Q
    |||| ||||||| | ||||||||||| |||||||||||||||||||||||    
T  27913491 attatttacacaaggatagaaggcaagcgggcaacaagctgcgccgctag 27913540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 742
Target Start/End: Original strand, 24113426 - 24113493
Alignment:
Q  675 tatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||| | ||||| ||| |||||||||||||| |||||||| || ||| ||| ||||||||    
T  24113426 tatatcaaggataaattacatatgaatagaaggcaaacgagcaacaagttgtgccactaaaccttttt 24113493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 727
Target Start/End: Original strand, 35310309 - 35310351
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcg 727  Q
    |||||||||||||| |||| |||||| ||||||||||||||||    
T  35310309 attacttacacatgaataggaggcaagcgggcaacaagctgcg 35310351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 668 - 742
Target Start/End: Original strand, 42921542 - 42921616
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||| ||||| ||  |||| |||||| || |||||||||||  ||| ||||||||||||||||||| ||||||    
T  42921542 atatatatatataaatcattatttacacttgaatagaaggcaagtgggaaacaagctgcgccgctagatcttttt 42921616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 742
Target Start/End: Complemental strand, 25663278 - 25663221
Alignment:
Q  685 attacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||||||||||  | || ||||||||| ||||||||||||| || |||||||||||    
T  25663278 attacttacacataaaaaggaggcaaacgagcaacaagctgcgtcgttagaccttttt 25663221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 690 - 742
Target Start/End: Original strand, 6754 - 6806
Alignment:
Q  690 ttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||| || ||||||||||| |||||||||||||||| ||||||||||||||    
T  6754 ttacacttgaatagaaggcaagcgggcaacaagctgcggcgctagaccttttt 6806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 742
Target Start/End: Complemental strand, 47783 - 47709
Alignment:
Q  668 atatatttatatcaaggattacttacacatgcatagaaggcaaacgggcaacaagctgcgccgctagaccttttt 742  Q
    |||||| ||||||||| ||||||||||| || ||||||| ||||||| ||||||| || ||||||| || |||||    
T  47783 atatatatatatcaagaattacttacacgtgaatagaagacaaacggacaacaagttgtgccgctaaacattttt 47709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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