View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_21 (Length: 364)
Name: NF3550_low_21
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 1045599 - 1045396
Alignment:
| Q |
18 |
agtgagagggtttcgttataattgaattgttttcgcgaagggtagaagcttcgatgatgcacttatgcagaacctaaaatgaaactgagaagacgatgaa |
117 |
Q |
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| T |
1045599 |
agtgagagggtgtcgttataattgaattgttttcgccatgggtagaagcttcgatggt----------ataaccgaaaatgaaactgagaagacgatgaa |
1045510 |
T |
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| Q |
118 |
tactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaattaatattttattgattgtaaataatgtaa |
217 |
Q |
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| T |
1045509 |
tactactatcgatctaaaaatatgatttttcttgtgaaataagttttttagttagattttgatggtaaaattaatattttattgattgtaaataatgtaa |
1045410 |
T |
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| Q |
218 |
caattttatagagt |
231 |
Q |
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| T |
1045409 |
caattttatagagt |
1045396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 25055109 - 25055151
Alignment:
| Q |
243 |
ggtggattctagggtgaaggttctattaagtgcctcattggtg |
285 |
Q |
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| T |
25055109 |
ggtggattctagggtgagggttcaattaagttcctcattggtg |
25055151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 24848475 - 24848407
Alignment:
| Q |
242 |
aggtggattctagggtgaaggttctattaagtgcctcattggtgt-ccatttaaatttgcccttagatg |
309 |
Q |
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| T |
24848475 |
aggtggattctagggtgagggttctattaagtccctcaccggtgtaccatttaaattggccgttagatg |
24848407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 24847783 - 24847838
Alignment:
| Q |
243 |
ggtggattctagggtgaaggttctattaagtgcctcattggtgt-ccatttaaatt |
297 |
Q |
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| T |
24847783 |
ggtggattctagggtgagggttctattaagtccctcaccggtgtaccatttaaatt |
24847838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 18569081 - 18569039
Alignment:
| Q |
229 |
agtgaaattaaataggtggattctagggtgaaggttctattaa |
271 |
Q |
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| T |
18569081 |
agtgtaattatataggtggattctagggtgaaggtcctattaa |
18569039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 4402335 - 4402299
Alignment:
| Q |
243 |
ggtggattctagggtgaaggttctattaagtgcctca |
279 |
Q |
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| T |
4402335 |
ggtggattctagggtgagggttctattaagtccctca |
4402299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 4707004 - 4706968
Alignment:
| Q |
243 |
ggtggattctagggtgaaggttctattaagtgcctca |
279 |
Q |
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| T |
4707004 |
ggtggattctagggtgagggttctattaagtccctca |
4706968 |
T |
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