View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_22 (Length: 344)
Name: NF3550_low_22
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 328
Target Start/End: Original strand, 21122619 - 21122940
Alignment:
| Q |
7 |
gtgagaagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtc |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21122619 |
gtgacaagaactccaaacattaggagcattcaaggacaaattgcagatatgttaaacttgaaattgggggaagaaagtgaagatggaagagcacaacgtc |
21122718 |
T |
|
| Q |
107 |
tatggttgcgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatga |
206 |
Q |
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| T |
21122719 |
tatggttgcgtttaaaagaaatgaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttatacaatga |
21122818 |
T |
|
| Q |
207 |
taatagaggtgcattgaaaatccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
21122819 |
taatagaggtgcattgaaaatccttgtaaccacacgtattgagaatgtttgtattttaatgaattgtcacaagatgattcatttggggctcttgtccaaa |
21122918 |
T |
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| Q |
307 |
gatgaatcctggacattcttcc |
328 |
Q |
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|||||||||||||||||||||| |
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| T |
21122919 |
gatgaatcctggacattcttcc |
21122940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 328
Target Start/End: Original strand, 21115200 - 21115513
Alignment:
| Q |
15 |
aactccaaacattaggagcattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttg |
114 |
Q |
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| T |
21115200 |
aactccaaatattagaggcattcagggaaaacttgcagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttg |
21115299 |
T |
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| Q |
115 |
cgtttaaaagaaataaagagaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagag |
214 |
Q |
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| T |
21115300 |
tgtttaaaacaaaagaagcgaattcttataatagtggacgatctatggagagagtttcatttgataaatatagggattctcgtagacaatgttaa-cgag |
21115398 |
T |
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| Q |
215 |
-gtgcattgaaaatccttgtaaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaat |
313 |
Q |
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||| ||| |||| ||||||| |||| |||| |||| |||| | |||| | |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21115399 |
cacacatggaaggtcctgataaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaat |
21115498 |
T |
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| Q |
314 |
cctggacattcttcc |
328 |
Q |
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| T |
21115499 |
cttggacattattcc |
21115513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 21715745 - 21715458
Alignment:
| Q |
33 |
cattcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaag |
132 |
Q |
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|||||||||| |||| ||||| ||||||||||| ||| | ||||||||| ||||| |||||||||||||| | |||||| |||| ||||||| || |
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| T |
21715745 |
cattcaaggaaaaatggcagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtggttgagtttgaaagaaaataaa |
21715646 |
T |
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| Q |
133 |
agaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttg |
232 |
Q |
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||| |||| | ||| |||| || |||||| ||||||| |||||| | ||| |||||||| | || |||||| ||| | || |||| ||||||||||| |
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| T |
21715645 |
cgaattcttgttataattgatgatttatggaaagagtttaatttgatgaatatagggattcacatagacaatgttaacaagggcgcatggaaaatccttg |
21715546 |
T |
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| Q |
233 |
taaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcatttggggctcttgtccaaagatgaatcctggac |
320 |
Q |
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| T |
21715545 |
taaccactcgtaatcagcaagtatgcactttaatggactgtcaaaagaatattcacctggcgctcttatctaaagatgaatcctggac |
21715458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 288
Target Start/End: Complemental strand, 23010646 - 23010392
Alignment:
| Q |
34 |
attcaaggacaaattgcagatatgttaaactttaaattgggggaagaaagtgaagatggaagagcacaacgtctatggttgcgtttaaaagaaataaaga |
133 |
Q |
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||||||||| |||| || ||| | || ||| | ||||||| |||||||||||| || ||||||||||||||| | |||||| |||| ||||||| ||| |
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| T |
23010646 |
attcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaacgtttgtggttgagtttgaaagaaaagaagc |
23010547 |
T |
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| Q |
134 |
gaactcttataatagttgacaatctatggagagagtttcatttgaaggatacagggattcgcttaaacaatgataatagaggtgcattgaaaatccttgt |
233 |
Q |
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| T |
23010546 |
ggattctcgtaatagtagatgatttatggagagagtttgatttgaacgatgtagggattcgcttagacaatgataacaagggtgcatggaagatccttgc |
23010447 |
T |
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| Q |
234 |
aaccacacgtattgagaatgtttgtaatttaatgaattgtcaaaagaagattcat |
288 |
Q |
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|||||| |||| | | |||| ||| || | ||| | |||||||||||||||||| |
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| T |
23010446 |
aaccactcgtaatcaacatgtatgtgatctgatgcactgtcaaaagaagattcat |
23010392 |
T |
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