View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_23 (Length: 339)
Name: NF3550_low_23
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 98 - 321
Target Start/End: Complemental strand, 15924801 - 15924578
Alignment:
| Q |
98 |
ttcataaaattaaaatggtagacttggataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
197 |
Q |
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| T |
15924801 |
ttcataaaattaaaatgttagacttgcataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
15924702 |
T |
|
| Q |
198 |
tttatcattcttccattgttaccatcatcatcttctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaa |
297 |
Q |
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| T |
15924701 |
tttatcattcttccattgttaccatcatcatcttctggacctggaaaaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcgccctaa |
15924602 |
T |
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| Q |
298 |
taggtttctttccattaagcttta |
321 |
Q |
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|||||||||||||||||||||||| |
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| T |
15924601 |
taggtttctttccattaagcttta |
15924578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 131 - 322
Target Start/End: Complemental strand, 13116586 - 13116395
Alignment:
| Q |
131 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
230 |
Q |
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| T |
13116586 |
ttgtattcccaattctcctgctagtttacatttcagctggtcaagttcttttcctggcaatgaaactgttatcatccttccattattaccatcagtatct |
13116487 |
T |
|
| Q |
231 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttat |
322 |
Q |
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| T |
13116486 |
tctggtcctggaagaaccaaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaatctttat |
13116395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 289
Target Start/End: Complemental strand, 46011718 - 46011560
Alignment:
| Q |
131 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
230 |
Q |
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||||||| |||||||| | | || ||| ||||||| ||||||||||||||||| || || |||| | ||| ||| |||||||| ||||||| | |||| |
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| T |
46011718 |
ttgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatct |
46011619 |
T |
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| Q |
231 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaatt |
289 |
Q |
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| T |
46011618 |
tctggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatt |
46011560 |
T |
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