View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_26 (Length: 329)
Name: NF3550_low_26
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 62 - 306
Target Start/End: Original strand, 13430584 - 13430832
Alignment:
| Q |
62 |
atatgtcagctcatgtcattgcatattccatcaattgatccatatcaataaatnnnnnnn----cttactaataacaggaagatccatctccaatccaat |
157 |
Q |
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| T |
13430584 |
atatgtcagctcatgtcattgcatattccatcaattgatccaaaacaataaaaaaaaaacaatacttactaataacaggaagatccatctccaatccaat |
13430683 |
T |
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| Q |
158 |
atgttccaaaagtttgaatccatccatatccggcatatgcacatcgcttaaaacaatgtcgaacccatttttattctctctaagaagtgataatgcaacc |
257 |
Q |
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| T |
13430684 |
atgttccaaaagtttgaatccatccatatccggcatatgcacatcgcttaaaacaatgtcgaacccatttttattctctctaagaagtgataatgcaacc |
13430783 |
T |
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| Q |
258 |
tcagctctcttacatttggtaactgaaattaatagacccaacaatcaaa |
306 |
Q |
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| T |
13430784 |
tcagctctcttacatttggtaactgaaataaatagacccaacaatcaaa |
13430832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 50106823 - 50106698
Alignment:
| Q |
122 |
cttactaataacaggaagatccatctccaatccaatatgttccaaaagtttgaatccatccatatccggcatatgcacatcgcttaaaacaatgtcgaac |
221 |
Q |
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| T |
50106823 |
cttactaataactggaaggtccatttccaatccaatatgttctaagagtttaaatccatccatgtctggcatatgcacatcactgataacaatatcaaat |
50106724 |
T |
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| Q |
222 |
ccatttttattctctctaagaagtga |
247 |
Q |
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| T |
50106723 |
ccattcttgttctctctgagtagtga |
50106698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 34316118 - 34316049
Alignment:
| Q |
124 |
tactaataacaggaagatccatctccaatccaatatgttccaaaagtttgaatccatccatatccggcat |
193 |
Q |
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| T |
34316118 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcat |
34316049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 11598579 - 11598499
Alignment:
| Q |
122 |
cttactaataacaggaagatccatctccaatccaatatgttccaaaagtttgaatccatccatatccggcatatgcacatc |
202 |
Q |
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| T |
11598579 |
cttactaataacaggaaggtccatttccaacccaacatgttcaaggagtttatagccatccatgtctggcatatgaacatc |
11598499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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