View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_27 (Length: 314)
Name: NF3550_low_27
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_27 |
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| [»] scaffold0838 (1 HSPs) |
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| [»] scaffold0832 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 21820712 - 21820999
Alignment:
| Q |
11 |
caaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaatatgctaagctctctcaaaattcaagagattgagcttgctagaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21820712 |
caaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaatatgctaagctctctcaaaattcaagagattgagcttgctagaga |
21820811 |
T |
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| Q |
111 |
tgaccagataagaagtctaagtctattgctttggcatctaagggaaaatctgataaagctttaaaaacttctgagtcagaagaattttgaagatgactca |
210 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
21820812 |
tgaccagataagaagtccaagtctattgctttggcatctaagggaaaatctgataaagctttaaaaacttctgagtcagaagaatcctgaagatgattca |
21820911 |
T |
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| Q |
211 |
agtcttgaaaagatgggttatttaatcaaaatatttcactacctgacaaagaagataatggttctaggtagaaggagttggtcaaaag |
298 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21820912 |
agttttgaaaagatgggttatttaatcaaaatatttcactacctgacaaaaaagataatggttctaggtagaaggagttggtcaaaag |
21820999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 13293168 - 13293352
Alignment:
| Q |
11 |
caaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaatatgctaagctctctcaaaattcaagagattgagcttgctagaaa |
110 |
Q |
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||||||| |||| |||||| |||||| |||| ||||||||| |||||||||||||| || ||||||| |||||| ||| ||||||||||||| | || | |
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| T |
13293168 |
caaaggttacaagcattcacgaagcaagggatttgaacacattgagcttggagaatctgataagctccctcaaatatcatgagattgagcttgttggaga |
13293267 |
T |
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| Q |
111 |
tg-accagataagaagtctaagtctattgctttggcatctaagggaaaatctgataaagctttaaaaacttctgagtcagaagaa |
194 |
Q |
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|| ||| | |||||| || ||||||||| ||||| |||| |||| |||||||| ||| || |||| ||| |||||||||||||| |
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| T |
13293268 |
tgaacctgctaagaaatcgaagtctatttctttgacatccaaggaaaaatctgccaaaactctaaagactgctgagtcagaagaa |
13293352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 13362019 - 13361855
Alignment:
| Q |
31 |
gaagcatgggacttgaacacactgagcttggagaatatgctaagctctctcaaaattcaagagattgagcttgctagaaatg-accagataagaagtcta |
129 |
Q |
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|||||| |||| ||||||||| |||||||||||||| || |||||||||||||| ||| |||||||| |||| | || ||| ||| | ||||||||| | |
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| T |
13362019 |
gaagcaagggatttgaacacattgagcttggagaatctgataagctctctcaaatatcatgagattgaacttgtttgagatgaacctgctaagaagtcga |
13361920 |
T |
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| Q |
130 |
agtctattgctttggcatctaagggaaaatctgataaagctttaaaaacttctgagtcagaagaa |
194 |
Q |
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|||||||| ||||| |||| |||| |||||||| ||| | ||||| ||| |||||||||||||| |
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| T |
13361919 |
agtctatttctttgacatccaaggaaaaatctgccaaaacattaaagactgctgagtcagaagaa |
13361855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 13361833 - 13361734
Alignment:
| Q |
199 |
gaagatgactcaagtcttgaaaagatgggttatttaatcaaaatatttcactacctgacaaagaagataatggttctaggtagaaggagttggtcaaaag |
298 |
Q |
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|||||||| ||||| ||||||||||||| |||||||| ||||||||| | ||| |||| |||||||||| | | ||||||| ||| | | ||||||||| |
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| T |
13361833 |
gaagatgattcaaggcttgaaaagatggcttatttaaccaaaatattgtattacttgaccaagaagataaggttactaggtaaaagcaatgggtcaaaag |
13361734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 13293374 - 13293473
Alignment:
| Q |
199 |
gaagatgactcaagtcttgaaaagatgggttatttaatcaaaatatttcactacctgacaaagaagataatggttctaggtagaaggagttggtcaaaag |
298 |
Q |
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|||||||| |||||||||||||||||| |||||||| ||||||||| | || |||| |||||||||| | | ||||||| ||| ||| ||| ||||| |
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| T |
13293374 |
gaagatgattcaagtcttgaaaagatgccttatttaaccaaaatattgtattagttgaccaagaagataaggatactaggtaaaagaagtgggttaaaag |
13293473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0838 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0838
Description:
Target: scaffold0838; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 1902 - 1750
Alignment:
| Q |
11 |
caaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaatatgctaagctctctcaaaattcaagagattgagcttgctagaaa |
110 |
Q |
| |
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||||||| ||||||||||| |||||| |||| |||||| || |||||||| ||| || |||| |||||||||| || |||||||| ||||| || | |
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| T |
1902 |
caaaggttacaaccattcaggaagcaaaggacatgaacaagctaagcttggaaaatctgataagttctctcaaaagacatgagattgattttgctggaga |
1803 |
T |
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| Q |
111 |
tgacca-gataagaagtctaagtctattgctttggcatctaagggaaaatctg |
162 |
Q |
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| | || ||||||||||| ||||||||||||||| |||| ||||||||||||| |
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| T |
1802 |
taaacatgataagaagtccaagtctattgctttgacatccaagggaaaatctg |
1750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0832 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0832
Description:
Target: scaffold0832; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 1933 - 1781
Alignment:
| Q |
11 |
caaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaatatgctaagctctctcaaaattcaagagattgagcttgctagaaa |
110 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| |||||| || |||||||| ||| || |||| |||||||||| || |||||||| ||||| || | |
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| T |
1933 |
caaaggttacaaccattcaggaagcaaaggacatgaacaagctaagcttggaaaatctgataagttctctcaaaagacatgagattgattttgctggaga |
1834 |
T |
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| Q |
111 |
tgacca-gataagaagtctaagtctattgctttggcatctaagggaaaatctg |
162 |
Q |
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| | || ||||||||||| ||||||||||||||| |||| ||||||||||||| |
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| T |
1833 |
taaacatgataagaagtccaagtctattgctttgacatccaagggaaaatctg |
1781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 22625922 - 22626021
Alignment:
| Q |
61 |
gagaatatgctaagctctctcaaaattcaagagattgagcttgctagaaatg-accagataagaagtctaagtctattgctttggcatctaagggaaaat |
159 |
Q |
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||||||||| ||||||||||||| | ||| ||||||||||||| | || ||| ||| | |||||| |||||||| ||||||||| | |||| |||||||| |
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| T |
22625922 |
gagaatatgataagctctctcaagagtcatgagattgagcttgtttgagatgaacctgctaagaattctaagtccattgctttgacttctatgggaaaat |
22626021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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