View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_low_3 (Length: 848)

Name: NF3550_low_3
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_low_3
NF3550_low_3
[»] chr2 (9 HSPs)
chr2 (514-806)||(10253079-10253371)
chr2 (193-478)||(10254992-10255277)
chr2 (384-518)||(10244340-10244474)
chr2 (11-116)||(10255354-10255455)
chr2 (668-802)||(10265708-10265839)
chr2 (399-446)||(10252901-10252948)
chr2 (399-454)||(10265514-10265569)
chr2 (515-582)||(10266089-10266155)
chr2 (753-802)||(10241797-10241846)
[»] chr6 (3 HSPs)
chr6 (193-290)||(19412031-19412122)
chr6 (728-802)||(8295357-8295430)
chr6 (728-770)||(33256325-33256367)
[»] chr7 (1 HSPs)
chr7 (208-290)||(7467334-7467410)
[»] scaffold0428 (1 HSPs)
scaffold0428 (728-770)||(443-485)
[»] chr4 (1 HSPs)
chr4 (209-247)||(31023077-31023115)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 514 - 806
Target Start/End: Complemental strand, 10253371 - 10253079
Alignment:
Q  514 catttcacaagctcgtgtgcaagttgggtttgataaatatttattcccctacttgaaggggtatcacaacgatgacttgataaataatcttgtaccgtga 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  10253371 catttcacaagctcgtgtgcaagttgggtttgataaatatttattcccctacttgaaggggtatcacaaatattacttgataaataatcttgtaccgtga 10253272  T
Q  614 tcattattcacaaaatcagaaaatgagagagcttcttctcaccatttatccaataattaatcttgatgttcacttcatcaataacaacacacagagagca 713  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10253271 tcattattcacaaaatcagaaaaggagaaagcttcttctcaccatttatccaataattaatcttgatgttcacttcatcaataacaacacacagagagta 10253172  T
Q  714 ccaagtcatattatattcctcattcccacacttggtccactcactccttccatgcaaccccatcttgattactctctcaccaaacatgagctt 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10253171 ccaagtcatattatattcctcattcccacacttggtccactcactccttccatgcaaccccatcttgattactctctcaccaaacatgagctt 10253079  T

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Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 193 - 478
Target Start/End: Complemental strand, 10255277 - 10254992
Alignment:
Q  193 tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgtaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255277 tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgtaa 10255178  T
Q  293 acaacttgaatacttccctatcaaacatgagcttcactgttcttcgacaaatcaaaattagaataataataaccgtattcaccatgatatgataaagcat 392  Q
    ||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10255177 acatcttgaatacttccctaccaaacatgaacttcactgttcttccacaaatcaaaattagaataataataaccctattcaccatgatatgataaagcat 10255078  T
Q  393 gttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtgcattactactttactgaggcctt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  10255077 gttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtacattactactttactgaagcctt 10254992  T

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Target: chr2; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 384 - 518
Target Start/End: Complemental strand, 10244474 - 10244340
Alignment:
Q  384 ataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtgcattactactttactgaggccttgtaaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  10244474 ataaagcatgttgagattgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagtacattactactttactgaggcattgtaaa 10244375  T
Q  484 gaagtgtattctaagagaaaaacttcatagcattt 518  Q
    |||||||||||||||||||||||||||||||||||    
T  10244374 gaagtgtattctaagagaaaaacttcatagcattt 10244340  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 10255455 - 10255354
Alignment:
Q  11 cagagatgcggtggagatcggtctgcgtgacggcgagggagggtgtggatgagatctgaagtgagagttccacgagtgtgttttcagaaagagaaatgtg 110  Q
    ||||||||||||||||||||||  | |||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255455 cagagatgcggtggagatcggtgcgtgtgacggcgaggg----tgaggatgagatctgaagtgagagttccacgagtgtgttttcagaaagagaaatgtg 10255360  T
Q  111 tttgag 116  Q
    ||||||    
T  10255359 tttgag 10255354  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 802
Target Start/End: Complemental strand, 10265839 - 10265708
Alignment:
Q  668 aattaatcttgatgttcacttcatcaataacaacacacagagagcaccaagtcatattatattcctcattcccacacttggtccactcactccttccatg 767  Q
    |||| ||||||||||| |||| |||||||||||||||  | ||| |||||||||||||     |||||||||||||||| ||||||||| || |||||||    
T  10265839 aattgatcttgatgtttacttaatcaataacaacaca--gtgagtaccaagtcatatt-----cctcattcccacactttgtccactcaatctttccatg 10265747  T
Q  768 ----caaccccatcttgattactctctcaccaaacatga 802  Q
         ||| |||||||||  |||||| ||||||||||||    
T  10265746 taatgaactccatcttgaagactctcccaccaaacatga 10265708  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 10252948 - 10252901
Alignment:
Q  399 attgagattgactcaagccttatcatgttcagtaatgtctccactagt 446  Q
    |||||||||||||||||||| |||||||| |  |||||||||||||||    
T  10252948 attgagattgactcaagcctcatcatgttgaacaatgtctccactagt 10252901  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 10265569 - 10265514
Alignment:
Q  399 attgagattgactcaagccttatcatgttcagtaatgtctccactagttctcaagt 454  Q
    |||||||||||||||||||| |||||||| ||||| |||||   ||||||||||||    
T  10265569 attgagattgactcaagcctcatcatgttaagtaaagtctctcatagttctcaagt 10265514  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 515 - 582
Target Start/End: Complemental strand, 10266155 - 10266089
Alignment:
Q  515 atttcacaagctcgtgtgcaagttgggtttgataaatatttattcccctacttgaaggggtatcacaa 582  Q
    |||||||  |||||||| || |||||| |||||||||||||||||||| ||||| |||| ||||||||    
T  10266155 atttcacttgctcgtgtccatgttgggcttgataaatatttattccccaacttg-agggttatcacaa 10266089  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 802
Target Start/End: Complemental strand, 10241846 - 10241797
Alignment:
Q  753 ctcactccttccatgcaaccccatcttgattactctctcaccaaacatga 802  Q
    |||||| ||||||||||||||  |||||| ||||||| ||||||||||||    
T  10241846 ctcacttcttccatgcaaccctctcttgaatactctcccaccaaacatga 10241797  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 19412031 - 19412122
Alignment:
Q  193 tcagtcaaattggtattaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgt 290  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||| ||||||||||| ||||||    
T  19412031 tcagtcaaattgtagttaattattatgatatttactaccattacatttcc------gagcacaatcatggtagcaaatcttatattttcttatagtgt 19412122  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 728 - 802
Target Start/End: Complemental strand, 8295430 - 8295357
Alignment:
Q  728 attcctcattcccacacttggtccactcactccttccatgcaaccccatcttgattactctctcaccaaacatga 802  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||||  |||||  ||||||||||||    
T  8295430 attcctcattcccacacttggtccactaactccttccatgcaa-tccatcttgaacactcttccaccaaacatga 8295357  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 728 - 770
Target Start/End: Original strand, 33256325 - 33256367
Alignment:
Q  728 attcctcattcccacacttggtccactcactccttccatgcaa 770  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  33256325 attcctcattcccacacttggtccactaactccttccatgcaa 33256367  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 7467410 - 7467334
Alignment:
Q  208 ttaattattatgatatttactaccattacatttcctagcagtagcacaatcatggtagaaaatcatatattttcttgtagtgt 290  Q
    |||||||| |||||||||||||||||||||||||||      |||||||||||||||| |||||  |||||||||||||||||    
T  7467410 ttaattataatgatatttactaccattacatttcct------agcacaatcatggtagcaaatctgatattttcttgtagtgt 7467334  T

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Target: scaffold0428 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 728 - 770
Target Start/End: Original strand, 443 - 485
Alignment:
Q  728 attcctcattcccacacttggtccactcactccttccatgcaa 770  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  443 attcctcattcccacacttggtccactaactccttccatgcaa 485  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 31023077 - 31023115
Alignment:
Q  209 taattattatgatatttactaccattacatttcctagca 247  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  31023077 taattattataatatttactaccattacatttcttagca 31023115  T

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