View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3550_low_31 (Length: 274)
Name: NF3550_low_31
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 40094066 - 40094324
Alignment:
| Q |
1 |
ctcctatcctagagactatcttttctatcaatttaagtacattgctaacattattgaacatgcttgnnnnnnnnacactaaagcaacaaatagttaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40094066 |
ctcctatcctagagactatcttttctatcaatttaagtacattgctaacattattgaacatgcttgttttttttacactaaagcaacaaatagttaagtt |
40094165 |
T |
|
| Q |
101 |
gaatgcgaaatatgatccctttgatgttgttcttctaccatatcccaatttgtatcacactttggttgaaaagttggcgtaccattccattaccatatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094166 |
gaatgcgaaatatgatccctttgatgttgttcttctaccatatcccaatttgtatcacactttggttgaaaagttggcgtaccattccattaccatatct |
40094265 |
T |
|
| Q |
201 |
aacattgtttatgtcgttcatgttgttagtaaatttgttatttctccactataatacat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094266 |
aacattgtttatgtcgttcatgttgttagtaaatttgttatttctccactataatacat |
40094324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University