View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_35 (Length: 252)
Name: NF3550_low_35
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_35 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 47958503 - 47958742
Alignment:
| Q |
13 |
gagatgcacggggttttgtcaataagatcgtgtttaaaagatgattatacacatttgaattcaccataagaaaagggtattggtacctgaaatcactagg |
112 |
Q |
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| T |
47958503 |
gagatgcacggggttttgtcaataagatcgtgtttaaaagatgattatacacatttgaattcaccataagaaaagggtattggtacctgaaatcactagg |
47958602 |
T |
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| Q |
113 |
attttctggccaaagagaaagcctttgtttttcttttggaaaaactcgaagagtaaggcgataagaccagtcaaggacttgcttatccgaaactattctg |
212 |
Q |
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| T |
47958603 |
attttctggccaaagagaaagcctttgtttttcttttggaaaaactcgaagagtaaggcgataagaccagtcaaggacttgcttatccgaaactattctg |
47958702 |
T |
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| Q |
213 |
tcatttccatagccttcagattcattcacagctcgtgcat |
252 |
Q |
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| T |
47958703 |
tcatttccatagccttcagattcattcacagctcgtgcat |
47958742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 47951196 - 47951297
Alignment:
| Q |
95 |
gtacctgaaatcactaggattttctggccaaagagaaagcctttgtttttcttttggaaaaactcgaagagtaaggcgataagaccagtcaaggacttgc |
194 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||| |||||| |
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| T |
47951196 |
gtacctgaaatcattaggattttttggccaaagagaaagccttcgtttttcctttggaaaaacatgaagagctaggcgataagaccagtcaagaacttgc |
47951295 |
T |
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| Q |
195 |
tt |
196 |
Q |
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| T |
47951296 |
tt |
47951297 |
T |
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