View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3550_low_36 (Length: 250)
Name: NF3550_low_36
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_36 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 14923068 - 14923299
Alignment:
| Q |
16 |
atcacaaagtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatactattttaattactaattcatttat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
14923068 |
atcacaaagtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatacgattttaa---ctaattcatttat |
14923164 |
T |
|
| Q |
116 |
ccatctatagctatatcnnnnnnnnctttccccttaaatatctatagctacgtagcaattgtaaattcttaatcttttagtaatttgcttagcaatctgt |
215 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14923165 |
tcatctatagctatatcttttttttctttcccctcaaatatctatagctatgtagcaattgtaaattcttaatcttttagtaatttgcttagcaatctgt |
14923264 |
T |
|
| Q |
216 |
acatctttcttaatacgacacaacatattgataaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14923265 |
acatctttcttaatacgacacaacatattgataaa |
14923299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 14914630 - 14914852
Alignment:
| Q |
23 |
agtcaaaggaaattgaaatattttaaacttttgactcgagcactatttgtcaattttaaactctcatactattttaattactaattcatttatccatcta |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
14914630 |
agtcaagggaaattgaaatattttaaacttttgactcgagcactattaagcaattttaaactctcatactatttta---accaattcattgatccatcta |
14914726 |
T |
|
| Q |
123 |
tagctatatc--nnnnnnnnctt----tccccttaaatatctatagctacgtagcaattgtaaattcttaatcttttagtaatttgc-ttagcaatctgt |
215 |
Q |
| |
|
|||| |||| ||| | |||| ||| ||||||||||| |||||||||||||| ||||||||||| || |||||||| ||| |
|
|
| T |
14914727 |
gagctgtatcttttttttttctttttcttccctcaaacatctatagcta---------tgtaaattcttaattttttagtaattcgctttagcaatatgt |
14914817 |
T |
|
| Q |
216 |
acatctttcttaatacgacacaacatattgataaa |
250 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
14914818 |
acatcttgcttaatacgacacgacatattgataaa |
14914852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University