View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_38 (Length: 246)
Name: NF3550_low_38
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 37629946 - 37629742
Alignment:
| Q |
25 |
gtaaatgttgaaaatataattgttttcctcattcttatttggatagacttacacgatgttacaattttaatgaactttttattgcccatactgcgttaca |
124 |
Q |
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| T |
37629946 |
gtaaatgttgaaaatataattgttttcctcattcttatttggttagacttacacgatgttacaatcttaatgaactttttattgcccgtactgcgttaga |
37629847 |
T |
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| Q |
125 |
gaatcttcgtcttcgatctctctttgcaacacaataaagaagtctaacggtttatctcggcatctgtctttaaagtcattgatctcatatatataagcaa |
224 |
Q |
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| T |
37629846 |
gaatcttcgtcttcgatctctcttcgcaacgcaataaagaagtctaacagtttatctcggcatctgtctttaaagtcattgatctcgtatctataagcaa |
37629747 |
T |
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| Q |
225 |
ggggg |
229 |
Q |
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||||| |
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| T |
37629746 |
ggggg |
37629742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 37629504 - 37629459
Alignment:
| Q |
61 |
atttggatagacttacacgatgttacaattttaatgaactttttat |
106 |
Q |
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| T |
37629504 |
atttggatagacttacacgatgttacaattttaattaactttttat |
37629459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 50183093 - 50183046
Alignment:
| Q |
138 |
cgatctctctttgcaacacaataaagaagtctaacggtttatctcggc |
185 |
Q |
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| T |
50183093 |
cgatctctcttcgcaacgcaataaagaagtctaacagtttatctcggc |
50183046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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