View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_low_41 (Length: 242)

Name: NF3550_low_41
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_low_41
NF3550_low_41
[»] chr7 (3 HSPs)
chr7 (1-224)||(40093695-40093917)
chr7 (68-121)||(49055251-49055304)
chr7 (75-118)||(7385860-7385903)
[»] chr1 (8 HSPs)
chr1 (68-144)||(17291163-17291239)
chr1 (68-143)||(5182945-5183020)
chr1 (68-143)||(52020483-52020558)
chr1 (68-139)||(17282734-17282805)
chr1 (68-139)||(24168925-24168996)
chr1 (68-139)||(45063622-45063693)
chr1 (68-144)||(17291944-17292020)
chr1 (68-121)||(17291447-17291500)
[»] chr8 (3 HSPs)
chr8 (68-143)||(8919453-8919528)
chr8 (68-143)||(42163275-42163350)
chr8 (68-142)||(40915137-40915211)
[»] chr5 (2 HSPs)
chr5 (68-143)||(17477312-17477387)
chr5 (68-142)||(2469556-2469630)
[»] chr2 (1 HSPs)
chr2 (68-140)||(32592967-32593039)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40093917 - 40093695
Alignment:
Q  1 caacagaaatccaagggcgcgatgaaaacaattggtaattaattatgtgcataaattattcaacaacgggtccatagctcagtggtagagcatttgactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093917 caacagaaatccaagggcgcgatgaaaacaattggtaattatttatgtgcataaattattcaacaacgggtccatagctcagtggtagagcatttgactg 40093818  T
Q  101 cagatcaagaggtcaccggttcgaacccggttgggccctttttgttttccttcttattttgtcctgtctctccaaatttagttcatctaattaacacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093817 cagatcaagaggtcaccggttcgaacccggttgggcccttttt-ttttccttcttattttgtcctgtctctccaaatttagttcatctaattaacacatt 40093719  T
Q  201 tgacaatgaatgataggccaactg 224  Q
    ||||||||||||||||||||||||    
T  40093718 tgacaatgaatgataggccaactg 40093695  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 49055251 - 49055304
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggtt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49055251 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggtt 49055304  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 7385860 - 7385903
Alignment:
Q  75 tagctcagtggtagagcatttgactgcagatcaagaggtcaccg 118  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  7385860 tagctcggtggtagagcatttgactgaagatcaagaggtcaccg 7385903  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 17291163 - 17291239
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctttttg 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17291163 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctttttg 17291239  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 5183020 - 5182945
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5183020 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 5182945  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 52020558 - 52020483
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52020558 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 52020483  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 17282734 - 17282805
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccct 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17282734 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccct 17282805  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 24168996 - 24168925
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccct 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24168996 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccct 24168925  T

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Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 45063693 - 45063622
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccct 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45063693 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccct 45063622  T

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Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 17292020 - 17291944
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctttttg 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  17292020 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgataccggttgggccctttttg 17291944  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 17291447 - 17291500
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggtt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17291447 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggtt 17291500  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 8919453 - 8919528
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8919453 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 8919528  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 42163350 - 42163275
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42163350 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 42163275  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 40915211 - 40915137
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctttt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40915211 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctttt 40915137  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 17477387 - 17477312
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17477387 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggcccttttt 17477312  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 2469630 - 2469556
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctttt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469630 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctttt 2469556  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 32592967 - 32593039
Alignment:
Q  68 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacccggttgggccctt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32592967 gggtccatagctcagtggtagagcatttgactgcagatcaagaggtcaccggttcgaacctggttgggccctt 32593039  T

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