View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3550_low_43 (Length: 242)
Name: NF3550_low_43
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 23576160 - 23576378
Alignment:
| Q |
3 |
aagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttcc |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23576160 |
aagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaaccgaaggtgatggttttgtctttggatttcc |
23576259 |
T |
|
| Q |
103 |
aacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||| |
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| T |
23576260 |
aacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggactatggaaaacacaacagcttgccggtaagcctgctggaatc |
23576359 |
T |
|
| Q |
203 |
ttctacagcaccagttccc |
221 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
23576360 |
ttctacagcaccagttccc |
23576378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23595728 - 23595948
Alignment:
| Q |
1 |
ataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23595728 |
ataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttttctttggattt |
23595827 |
T |
|
| Q |
101 |
ccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaa |
200 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
23595828 |
ccaacaagatttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcagggaagcctgccggaa |
23595927 |
T |
|
| Q |
201 |
tcttctacagcaccagttccc |
221 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
23595928 |
tcttctacagcatcagttccc |
23595948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23604650 - 23604870
Alignment:
| Q |
1 |
ataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23604650 |
ataagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttttctttggattt |
23604749 |
T |
|
| Q |
101 |
ccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
23604750 |
ccaacaagatttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcagggaagcctgccggaa |
23604849 |
T |
|
| Q |
201 |
tcttctacagcaccagttccc |
221 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
23604850 |
tcttctacagcatcagttccc |
23604870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 23590474 - 23590685
Alignment:
| Q |
8 |
gtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaacaa |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||| | |||||| ||||| || |||| ||||||||||||||||||||||||||||||| |
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|
| T |
23590474 |
gtacttggaaagatgagagcaccacccaag--tgatgtaccaattactacccccaatgagctttctgagggtgatggttttgtctttggatttccaacaa |
23590571 |
T |
|
| Q |
108 |
gatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttcta |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
23590572 |
gatttggaatgatggctgctcaatttaaagcctttctagatgcaactggtggtctttggaaaacacaacagcttgtagggaagcctgccagaatcttcta |
23590671 |
T |
|
| Q |
208 |
cagcaccagttccc |
221 |
Q |
| |
|
|| ||| ||||||| |
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|
| T |
23590672 |
caacactagttccc |
23590685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 23564535 - 23564476
Alignment:
| Q |
139 |
ctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccgg |
198 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23564535 |
ctttctagaagaaactgtaggtctatggaaaacaggacagcttgcagggaagcctgccgg |
23564476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 34339516 - 34339724
Alignment:
| Q |
5 |
gaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaa |
104 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||||||||||||| |||| || || |||||||| |||| |||||||||||||||||||| || |||| |
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|
| T |
34339516 |
gaggtgcttggaaagatgagtgcaccacccaagagtgatgtaccactcatcacaccaaatgaactgtctgagggtgatggttttgtctttggcttcccaa |
34339615 |
T |
|
| Q |
105 |
caagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatctt |
204 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| ||||| ||||||||| ||||||||||||||||| |
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|
| T |
34339616 |
caagatttggaatgatggctgctcaattcaaagcttttcttgatgctactggtggtttgtggaaagcacaatcgcttgcaggcaagcctgccggaatctt |
34339715 |
T |
|
| Q |
205 |
ctacagcac |
213 |
Q |
| |
|
||||||||| |
|
|
| T |
34339716 |
ctacagcac |
34339724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 195
Target Start/End: Complemental strand, 2645735 - 2645619
Alignment:
| Q |
79 |
tgatggttttgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacag |
178 |
Q |
| |
|
|||||||||| | ||||| |||||| |||||| |||||||||| ||||||| || |||| ||| | ||||||||||| || ||||||| | |||| |
|
|
| T |
2645735 |
tgatggttttttgtttggttttccagcaagatatggaatgatgtctgctcaattcaaagtattttttgatgcaactggaagtttatggaacaaacaaaca |
2645636 |
T |
|
| Q |
179 |
cttgcagggaagcctgc |
195 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
2645635 |
cttgcaggaaagcctgc |
2645619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 2649524 - 2649414
Alignment:
| Q |
103 |
aacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatc |
202 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||| | ||| ||||||| | |||||| ||||| | |||||||| |||||||| || ||| |
|
|
| T |
2649524 |
aacaagatttggaatgatggctactcaattcaaagcatttatggatacaactggagacctatggtgcacacagaaacttgcaggaaagcctgctggcatc |
2649425 |
T |
|
| Q |
203 |
ttctacagcac |
213 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2649424 |
ttttacagcac |
2649414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 36461617 - 36461818
Alignment:
| Q |
12 |
ttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttgtctttggatttccaacaagatt |
111 |
Q |
| |
|
|||| |||||| ||| ||| || ||||||||||| ||||| ||||| || ||| ||| |||| | ||||||||| | |||| || || |||||||| |
|
|
| T |
36461617 |
ttgggaagatgggaggacctccaaagagtgatgtgccaattattacacctgatgcgctacctgaggctgatggtttgttgcttggcttcccgacaagatt |
36461716 |
T |
|
| Q |
112 |
tggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttctacagc |
211 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||||||||||||| |||||| || || |||||||| |||||||| |||||||| |||||| |
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|
| T |
36461717 |
tggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatggcgtactcaggcacttgcaggaaagcctgcaggaatcttttacagc |
36461816 |
T |
|
| Q |
212 |
ac |
213 |
Q |
| |
|
|| |
|
|
| T |
36461817 |
ac |
36461818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 36455339 - 36455400
Alignment:
| Q |
105 |
caagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatgg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||| |
|
|
| T |
36455339 |
caagatttggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatgg |
36455400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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