View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_44 (Length: 241)
Name: NF3550_low_44
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 14923496 - 14923706
Alignment:
| Q |
11 |
gtacaaatccacatgcatattcaatccatgtgatcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggc |
110 |
Q |
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| T |
14923496 |
gtacaaatccacatgcatattcaatccatatgatcccttgtattttgttgatttccaaccaattcatcaacttacacttcttgaatgatttttgcatggc |
14923595 |
T |
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| Q |
111 |
tagtgatgcaacagtttcctctaacattactttcatcttcttttctttactcttagcttttcactttgctatggcagtccaagaacacactttaacaaaa |
210 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14923596 |
tagtgatgcaacattttcctccaacattactttcatcttcttttctttactcttagcttttcactttgctatggcagtccaagaacacactttaacaaaa |
14923695 |
T |
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| Q |
211 |
gatgatgccaa |
221 |
Q |
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||||||||||| |
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| T |
14923696 |
gatgatgccaa |
14923706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 14915005 - 14915215
Alignment:
| Q |
11 |
gtacaaatccacatgcatattcaatccatgtgatcccttgtattttgttgatttccaacccattcatcaacttacacttcttgaatgatttttgtatggc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
14915005 |
gtacaaatccacatgcatattcaatccatgtgatcccttgtattttgttgattttcaaccaattcatcaacttacacttcttgaatgatttttgcatggc |
14915104 |
T |
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| Q |
111 |
tagtgatgcaacagtttcctctaacattactttcatcttcttttctttactcttagcttttcactttgctatggcagtccaagaacacactttaacaaaa |
210 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14915105 |
tagtgatgcaacattttcctccaacattactttcatcttcttttctttactcttagcttttcactttgctatggcagtccaagaacacactttaacaaaa |
14915204 |
T |
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| Q |
211 |
gatgatgccaa |
221 |
Q |
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||||| ||||| |
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| T |
14915205 |
gatgaggccaa |
14915215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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