View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3550_low_48 (Length: 238)
Name: NF3550_low_48
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_48 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 13858767 - 13858995
Alignment:
| Q |
10 |
catcatcagtcctttctactaataatatgcccattgatgcgcttgttgttgctgctaatcgaactctgttgcctgttgtatactatccaaggtatattta |
109 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13858767 |
catcatcagtcctttctgctaataatatgcccattgatgcgcttgttgttgctgctaatcgaactctgttgcctgttgtatactatccagggtatattta |
13858866 |
T |
|
| Q |
110 |
atttgctctaagccttgcctaaccaaggttaatttatagtataacaaatacaaacttttggattaggatatacttttcttgagtgtaatgtctgtttctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13858867 |
atttgctctaagccttgcctaaccaaggttaatttatagtataacaaatacaaacttttggattaggatatacttttcttgagtgtaatgtttgtttctg |
13858966 |
T |
|
| Q |
210 |
ctcatttgcagagcatgcgtgtcagaatt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13858967 |
ctcatttgcagagcatgcgtgtcagaatt |
13858995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University