View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_50 (Length: 235)
Name: NF3550_low_50
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 10241367 - 10241186
Alignment:
| Q |
38 |
atcattctttctattgtttttaaaactatcaatgtggggctattttaatatgttcgtttgaatgcctaaactagttatagactatactatataagatatc |
137 |
Q |
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| T |
10241367 |
atcattctttctattgtttttaaaactatcaatgtggggctattttaatatgttcgtttgaattcctaaactagt--tagagtatactaaataagatatc |
10241270 |
T |
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| Q |
138 |
aagatccatgtag-----aataaagcattgagattgactcaagcttcatcattgttaattagtacatgattatcttgacattacattg |
220 |
Q |
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| T |
10241269 |
aagattcatgtagaataaaataaagcattgagattgactcaagcttcatcattg----ttagtacatgattatcttgacattacattg |
10241186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 10253595 - 10253453
Alignment:
| Q |
5 |
aacaaatgagatggacggaagttttataaataaatcattctttctattgtttttaaaactatcaatgtggggctattttaatatgttcgtttgaatgcct |
104 |
Q |
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| T |
10253595 |
aacaaatgagatggcctgcagttttatagatgaatcattctctctattgtttt-aaaactatcaatgtgggattattttaatatgttggtttgaatgctt |
10253497 |
T |
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| Q |
105 |
aaactagttatagactatactatataagatatcaagatccatgtag |
150 |
Q |
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| T |
10253496 |
taacta--tcgagagcatactatataagctatcaagatccatgtag |
10253453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 10243750 - 10243693
Alignment:
| Q |
54 |
tttttaaaactatcaatgtggggctattttaatatgttcgtttgaatgcctaaactag |
111 |
Q |
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| T |
10243750 |
tttttaaaactctcgatgttggactatttttatatgttcgtttgaatgcttaaactag |
10243693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 10252955 - 10252923
Alignment:
| Q |
152 |
ataaagcattgagattgactcaagcttcatcat |
184 |
Q |
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| T |
10252955 |
ataaagcattgagattgactcaagcctcatcat |
10252923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 10265576 - 10265544
Alignment:
| Q |
152 |
ataaagcattgagattgactcaagcttcatcat |
184 |
Q |
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| T |
10265576 |
ataaagcattgagattgactcaagcctcatcat |
10265544 |
T |
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