View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_53 (Length: 232)
Name: NF3550_low_53
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 9031444 - 9031640
Alignment:
| Q |
23 |
agcaggaaatactaactttataacattcaaatctgatatgactttgggcttttgaataatattaaatccttctttccttgttaatataactaaaaagatt |
122 |
Q |
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| T |
9031444 |
agcaggaaatactatctttagaacattcaaatctgatataactttgggcttttgaataatattaaatccttattctcttgttaatccaactaaaaaaaat |
9031543 |
T |
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| Q |
123 |
a-cttatttttgattgtgtagatcttaaccaatggaaaatataagagccatgtccatcgagttattgttaacaagaataaggtgcaaaggatctctg |
218 |
Q |
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| T |
9031544 |
aacttatttttgattgtgtagatcttaaccaatggaaaatataagagccacgtccatcgagttattgttaacaagaacaaggtgcaaaggatatctg |
9031640 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 9038976 - 9039050
Alignment:
| Q |
144 |
tcttaaccaatggaaaatataagagccatgtccatcgagttattgttaacaagaataaggtgcaaaggatctctg |
218 |
Q |
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| T |
9038976 |
tcttaaccaatggaaaatataagagccatgtccatcgagttattgttaaaaagaacaagttgcaaaggatctctg |
9039050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 218
Target Start/End: Original strand, 9048408 - 9048488
Alignment:
| Q |
138 |
tgtagatcttaaccaatggaaaatataagagccatgtccatcgagttattgttaacaagaataaggtgcaaaggatctctg |
218 |
Q |
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| T |
9048408 |
tgtagattttaactaatgggaaatataagagtcatgtccaccgagtaattgttaacaacaacaaggtgcaaaggatctctg |
9048488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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