View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_58 (Length: 225)
Name: NF3550_low_58
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 35373260 - 35373053
Alignment:
| Q |
1 |
taacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaatacatgcaagctaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373260 |
taacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaatacatgcaagctaaa |
35373161 |
T |
|
| Q |
101 |
tggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaagaatattaatccaaagcagaagccaaaagcatcaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
35373160 |
tggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagccaaaggcatcaatgt |
35373061 |
T |
|
| Q |
201 |
taacagtg |
208 |
Q |
| |
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|||||||| |
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| T |
35373060 |
taacagtg |
35373053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 35365144 - 35364941
Alignment:
| Q |
1 |
taacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcacatgggaccatggagaaaacataaatacatgcaagctaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35365144 |
taacataatcaagattatgtgtatggcagctaaaaggtgtttgaaggaaaacaaaatgcatatgggaccatggagaaaacataaatacatgcaagctaaa |
35365045 |
T |
|
| Q |
101 |
tggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaagaatattaatccaaagcagaagccaaaagcatcaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
35365044 |
tggttaggtccatttaaaaggaacacttcaacaaattcactttcattgggatattctgagaggaatattaatccaaagcagaagccaaaggcatcaatgt |
35364945 |
T |
|
| Q |
201 |
taac |
204 |
Q |
| |
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|||| |
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| T |
35364944 |
taac |
35364941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 3776214 - 3776333
Alignment:
| Q |
42 |
tgaaggaaaacaaaatgcacatgggaccatggagaaaacataaatacatgcaagctaagtggttaggtccatttaaaaggaacacttcaacaaattcact |
141 |
Q |
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||||||| || |||||||||||||| |||||||| || |||| |||||||||||||| ||||||||||||| | |||||||||||||||||| | | || |
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| T |
3776214 |
tgaaggataaaaaaatgcacatggggccatggaggaagcataggtacatgcaagctaaatggttaggtccatgtgaaaggaacacttcaacaactcctct |
3776313 |
T |
|
| Q |
142 |
ttcattgggatattctgaga |
161 |
Q |
| |
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| || ||||| ||||||||| |
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| T |
3776314 |
tccaatgggaaattctgaga |
3776333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 3807935 - 3808013
Alignment:
| Q |
57 |
tgcacatgggaccatggagaaaacataaatacatgcaagctaagtggttaggtccatttaaaaggaacacttcaacaaa |
135 |
Q |
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|||| ||||| |||||||| | ||||| |||||| ||||||| ||||||||||||| | ||||| || |||||||||| |
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| T |
3807935 |
tgcatatggggccatggaggaggcataagtacatggaagctaaatggttaggtccatgtgaaaggtacccttcaacaaa |
3808013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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