View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_low_60 (Length: 219)

Name: NF3550_low_60
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_low_60
NF3550_low_60
[»] chr4 (4 HSPs)
chr4 (44-203)||(46449953-46450112)
chr4 (45-96)||(8569263-8569314)
chr4 (63-96)||(5892428-5892461)
chr4 (44-85)||(36396146-36396186)
[»] chr8 (4 HSPs)
chr8 (44-96)||(17607489-17607541)
chr8 (44-96)||(17602799-17602851)
chr8 (54-96)||(5478898-5478940)
chr8 (44-84)||(9784829-9784869)
[»] chr5 (2 HSPs)
chr5 (44-96)||(25725704-25725756)
chr5 (44-84)||(39897242-39897282)
[»] scaffold0256 (1 HSPs)
scaffold0256 (44-96)||(15197-15250)
[»] scaffold0012 (1 HSPs)
scaffold0012 (53-96)||(165537-165580)
[»] chr3 (2 HSPs)
chr3 (44-96)||(10863188-10863240)
chr3 (44-84)||(22419310-22419350)
[»] chr7 (4 HSPs)
chr7 (44-84)||(25453936-25453976)
chr7 (44-84)||(25470820-25470860)
chr7 (44-84)||(35934004-35934044)
chr7 (44-84)||(35938605-35938645)
[»] chr1 (4 HSPs)
chr1 (44-84)||(26623159-26623199)
chr1 (44-84)||(26627754-26627794)
chr1 (44-84)||(49116326-49116366)
chr1 (44-84)||(49120919-49120959)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 46449953 - 46450112
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttatgtccttatttcttcgatatgcgtttgtaactatgtaaggtttatgtagctgatattgac 143  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46449953 aataattacatataatggaaacaaatcaatttctggtttatgtccttatttcttcgatatgcgtttgtaactatgtaaggtttatgtagctgatattgac 46450052  T
Q  144 ctttacttactattttcagctgattttggttgctttaattacaatgactgtctttttccg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46450053 ctttacttactattttcagctgattttggttgctttaattacaatgactgtctttttccg 46450112  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 8569263 - 8569314
Alignment:
Q  45 ataattacatataatggaaacaaatcaatttctgatttatgtccttatttct 96  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8569263 ataattacatataatggaaacaaatcaatttttgatttatgtccttatttct 8569314  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 5892461 - 5892428
Alignment:
Q  63 aacaaatcaatttctgatttatgtccttatttct 96  Q
    |||||||||||||||||||| |||||||||||||    
T  5892461 aacaaatcaatttctgatttgtgtccttatttct 5892428  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 36396146 - 36396186
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttatg 85  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  36396146 aataattacaaataatggaaac-aatcaatttctgatttatg 36396186  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 17607489 - 17607541
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttatgtccttatttct 96  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17607489 aataattacatatattggaaacaaatcaatttctgatttatgtccttatttct 17607541  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 17602799 - 17602851
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttatgtccttatttct 96  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  17602799 aataattacttatattggaaacaaatcaatttctgatttaggtccttatttct 17602851  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 5478898 - 5478940
Alignment:
Q  54 tataatggaaacaaatcaatttctgatttatgtccttatttct 96  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  5478898 tataatggaaataaatcaatttctaatttatgtccttatttct 5478940  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 9784829 - 9784869
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  9784829 aataattacaattattggaaacaaatcaatttctgatttat 9784869  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 25725704 - 25725756
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttatgtccttatttct 96  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25725704 aataattacatataatggaaacaaatcaatttctgatttatgtctttatttct 25725756  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 39897242 - 39897282
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  39897242 aataattacaattattggaaacaaatcaatttctgatttat 39897282  T

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Target: scaffold0256 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 15197 - 15250
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttatgt-ccttatttct 96  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  15197 aataattacatataatggaaacaaatcaatttctaatttatgtcccttatttct 15250  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 165580 - 165537
Alignment:
Q  53 atataatggaaacaaatcaatttctgatttatgtccttatttct 96  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  165580 atatattggaaacaaatcaatttctgatttatgtccttatttct 165537  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 10863240 - 10863188
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttatgtccttatttct 96  Q
    ||||||||||| |||||  ||||||||||||| |||||| |||||||||||||    
T  10863240 aataattacatttaatgagaacaaatcaatttatgatttgtgtccttatttct 10863188  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 22419310 - 22419350
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  22419310 aataattacaattattggaaacaaatcaatttctgatttat 22419350  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 25453936 - 25453976
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  25453936 aataattacaattattggaaacaaatcaatttctgatttat 25453976  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 25470820 - 25470860
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  25470820 aataattacaattattggaaacaaatcaatttctgatttat 25470860  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 35934004 - 35934044
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  35934004 aataattacaattattggaaacaaatcaatttctgatttat 35934044  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 35938605 - 35938645
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  35938605 aataattacaattattggaaacaaatcaatttctgatttat 35938645  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 26623159 - 26623199
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  26623159 aataattacaattattggaaacaaatcaatttctgatttat 26623199  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 26627754 - 26627794
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  26627754 aataattacaattattggaaacaaatcaatttctgatttat 26627794  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 49116366 - 49116326
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  49116366 aataattacaattattggaaacaaatcaatttctgatttat 49116326  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 49120959 - 49120919
Alignment:
Q  44 aataattacatataatggaaacaaatcaatttctgatttat 84  Q
    ||||||||||  || ||||||||||||||||||||||||||    
T  49120959 aataattacaattattggaaacaaatcaatttctgatttat 49120919  T

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