View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3550_low_7 (Length: 569)

Name: NF3550_low_7
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3550_low_7
NF3550_low_7
[»] chr7 (35 HSPs)
chr7 (108-562)||(16186472-16186927)
chr7 (70-226)||(15575649-15575806)
chr7 (70-226)||(43745551-43745708)
chr7 (70-215)||(18874665-18874810)
chr7 (70-226)||(47095347-47095504)
chr7 (70-223)||(48212727-48212883)
chr7 (70-226)||(4690663-4690820)
chr7 (70-226)||(20252182-20252343)
chr7 (70-171)||(19195562-19195663)
chr7 (70-177)||(708429-708537)
chr7 (17-81)||(11390980-11391044)
chr7 (69-174)||(43276743-43276848)
chr7 (70-175)||(25943213-25943319)
chr7 (20-81)||(2261-2323)
chr7 (70-144)||(8488094-8488169)
chr7 (70-131)||(38299738-38299800)
chr7 (70-175)||(58413-58517)
chr7 (70-144)||(8513753-8513828)
chr7 (85-175)||(15700750-15700840)
chr7 (70-123)||(3287743-3287796)
chr7 (70-175)||(8930765-8930872)
chr7 (70-126)||(13315082-13315138)
chr7 (17-81)||(14287214-14287278)
chr7 (17-59)||(16842998-16843040)
chr7 (69-123)||(19283055-19283109)
chr7 (70-175)||(33556105-33556211)
chr7 (70-175)||(13744510-13744614)
chr7 (69-175)||(15720724-15720832)
chr7 (70-175)||(18570592-18570699)
chr7 (17-81)||(14280748-14280812)
chr7 (70-126)||(36300641-36300697)
chr7 (70-132)||(16250222-16250285)
chr7 (226-293)||(47095266-47095332)
chr7 (226-266)||(15307522-15307562)
chr7 (226-262)||(18874833-18874869)
[»] chr5 (20 HSPs)
chr5 (69-226)||(23199206-23199364)
chr5 (70-264)||(18744723-18744926)
chr5 (84-226)||(660685-660827)
chr5 (67-226)||(1627064-1627225)
chr5 (17-81)||(19077503-19077567)
chr5 (70-171)||(16063701-16063803)
chr5 (20-81)||(31251842-31251903)
chr5 (120-180)||(21504081-21504141)
chr5 (17-81)||(27634970-27635034)
chr5 (70-175)||(32607316-32607423)
chr5 (70-171)||(6551290-6551392)
chr5 (17-81)||(26651371-26651435)
chr5 (17-81)||(26922956-26923020)
chr5 (70-175)||(21398644-21398752)
chr5 (17-81)||(24058574-24058637)
chr5 (226-293)||(1627240-1627306)
chr5 (226-293)||(23199379-23199445)
chr5 (147-175)||(22111923-22111951)
chr5 (17-53)||(23543988-23544024)
chr5 (120-175)||(24068175-24068231)
[»] chr2 (20 HSPs)
chr2 (70-226)||(21335266-21335423)
chr2 (70-226)||(21315476-21315633)
chr2 (70-227)||(21369187-21369345)
chr2 (70-201)||(23610546-23610678)
chr2 (17-77)||(20725035-20725095)
chr2 (70-175)||(28344988-28345092)
chr2 (17-81)||(28970362-28970427)
chr2 (70-126)||(23801492-23801548)
chr2 (110-174)||(25584302-25584367)
chr2 (112-179)||(28652593-28652662)
chr2 (17-81)||(2106590-2106654)
chr2 (17-56)||(19702579-19702618)
chr2 (27-81)||(24944357-24944412)
chr2 (70-174)||(149501-149610)
chr2 (110-175)||(19647180-19647246)
chr2 (70-171)||(20005971-20006072)
chr2 (226-264)||(21369135-21369173)
chr2 (43-81)||(24653344-24653382)
chr2 (147-175)||(25584190-25584218)
chr2 (17-81)||(25589744-25589807)
[»] chr1 (26 HSPs)
chr1 (84-293)||(12710698-12710905)
chr1 (70-226)||(28476734-28476891)
chr1 (84-226)||(24719524-24719667)
chr1 (17-81)||(11946481-11946545)
chr1 (20-81)||(43629247-43629308)
chr1 (70-177)||(38056672-38056780)
chr1 (17-81)||(20823499-20823563)
chr1 (70-175)||(34392713-34392820)
chr1 (70-144)||(50544849-50544924)
chr1 (70-177)||(8275989-8276097)
chr1 (70-132)||(17901794-17901857)
chr1 (68-144)||(22145664-22145741)
chr1 (70-174)||(8306552-8306658)
chr1 (17-81)||(20837310-20837374)
chr1 (70-174)||(24007225-24007330)
chr1 (69-175)||(20588581-20588691)
chr1 (69-175)||(20593119-20593229)
chr1 (70-123)||(635004-635057)
chr1 (110-174)||(39061268-39061333)
chr1 (85-132)||(6834165-6834213)
chr1 (70-118)||(45499546-45499594)
chr1 (17-81)||(16882638-16882703)
chr1 (70-129)||(35895092-35895151)
chr1 (17-59)||(47485108-47485150)
chr1 (17-81)||(20595208-20595271)
chr1 (120-175)||(40390096-40390152)
[»] scaffold0853 (1 HSPs)
scaffold0853 (69-293)||(2453-2692)
[»] scaffold0056 (1 HSPs)
scaffold0056 (70-226)||(18170-18327)
[»] chr8 (22 HSPs)
chr8 (70-226)||(18816295-18816452)
chr8 (69-226)||(21514586-21514744)
chr8 (70-264)||(4380617-4380819)
chr8 (70-171)||(36732412-36732514)
chr8 (16-81)||(44474648-44474713)
chr8 (70-174)||(22208216-22208321)
chr8 (70-175)||(21399662-21399769)
chr8 (70-175)||(21794155-21794262)
chr8 (69-175)||(18834371-18834475)
chr8 (70-174)||(12577826-12577931)
chr8 (70-182)||(21676593-21676704)
chr8 (74-132)||(22483775-22483834)
chr8 (70-126)||(22345160-22345216)
chr8 (70-126)||(22356820-22356876)
chr8 (69-135)||(22258305-22258372)
chr8 (226-264)||(21514533-21514571)
chr8 (17-59)||(29298161-29298203)
chr8 (17-59)||(29304716-29304758)
chr8 (84-132)||(18023570-18023619)
chr8 (70-175)||(22610267-22610371)
chr8 (84-132)||(38184926-38184975)
chr8 (147-175)||(23884116-23884144)
[»] chr3 (36 HSPs)
chr3 (70-219)||(17208426-17208576)
chr3 (70-226)||(14520341-14520498)
chr3 (70-226)||(24547095-24547252)
chr3 (17-81)||(5842915-5842979)
chr3 (151-226)||(24549033-24549108)
chr3 (17-77)||(45219348-45219408)
chr3 (17-81)||(12960495-12960559)
chr3 (70-174)||(14152399-14152504)
chr3 (70-177)||(29907582-29907691)
chr3 (70-177)||(29948748-29948857)
chr3 (70-177)||(29997902-29998011)
chr3 (70-175)||(6156656-6156762)
chr3 (69-175)||(54875473-54875581)
chr3 (70-177)||(14641548-14641656)
chr3 (70-175)||(2841506-2841613)
chr3 (74-175)||(22841283-22841390)
chr3 (70-175)||(3527157-3527261)
chr3 (17-81)||(12724254-12724318)
chr3 (70-175)||(6159350-6159457)
chr3 (70-175)||(14442120-14442227)
chr3 (70-174)||(5215594-5215699)
chr3 (84-175)||(17669712-17669805)
chr3 (69-175)||(17684834-17684942)
chr3 (84-132)||(45803345-45803394)
chr3 (120-180)||(21845702-21845762)
chr3 (17-81)||(31944432-31944499)
chr3 (226-293)||(17208338-17208404)
chr3 (17-59)||(18718244-18718287)
chr3 (226-293)||(24547014-24547080)
chr3 (120-175)||(48631278-48631333)
chr3 (17-59)||(27033974-27034015)
chr3 (84-132)||(2247880-2247929)
chr3 (44-81)||(11964061-11964098)
chr3 (17-81)||(31689727-31689794)
chr3 (139-175)||(12155094-12155130)
chr3 (147-179)||(50350896-50350928)
[»] scaffold0878 (1 HSPs)
scaffold0878 (70-226)||(3422-3579)
[»] chr4 (23 HSPs)
chr4 (70-226)||(25513746-25513903)
chr4 (74-226)||(26446102-26446255)
chr4 (70-194)||(14631062-14631187)
chr4 (70-226)||(2424387-2424544)
chr4 (17-81)||(37837725-37837789)
chr4 (17-81)||(42596424-42596488)
chr4 (69-174)||(33186850-33186956)
chr4 (70-162)||(16296897-16296990)
chr4 (20-81)||(41528184-41528245)
chr4 (69-174)||(12424289-12424397)
chr4 (70-177)||(9638954-9639062)
chr4 (84-171)||(35660906-35660994)
chr4 (70-179)||(15239816-15239927)
chr4 (70-175)||(9622434-9622541)
chr4 (17-81)||(23122623-23122687)
chr4 (70-175)||(55583141-55583248)
chr4 (70-123)||(13847200-13847253)
chr4 (70-126)||(10273379-10273435)
chr4 (17-56)||(15325914-15325953)
chr4 (226-293)||(2424559-2424625)
chr4 (301-340)||(14645595-14645634)
chr4 (17-81)||(900523-900587)
chr4 (112-179)||(45314124-45314193)
[»] chr6 (24 HSPs)
chr6 (69-226)||(20410511-20410667)
chr6 (70-204)||(15998806-15998941)
chr6 (17-81)||(28709608-28709672)
chr6 (70-166)||(21683075-21683171)
chr6 (166-226)||(21686158-21686218)
chr6 (17-81)||(19587678-19587742)
chr6 (70-159)||(19825486-19825576)
chr6 (70-165)||(23658044-23658141)
chr6 (17-81)||(2709373-2709437)
chr6 (90-177)||(18982515-18982604)
chr6 (70-175)||(10446162-10446269)
chr6 (120-175)||(1818899-1818954)
chr6 (70-132)||(29045260-29045323)
chr6 (17-81)||(26417759-26417823)
chr6 (17-81)||(14995190-14995252)
chr6 (17-81)||(12446308-12446371)
chr6 (226-293)||(20410682-20410748)
chr6 (35-81)||(14615397-14615443)
chr6 (17-59)||(29926696-29926738)
chr6 (17-81)||(19819892-19819956)
chr6 (112-179)||(25601371-25601437)
chr6 (17-81)||(1593752-1593816)
chr6 (17-81)||(21723848-21723912)
chr6 (70-169)||(34140456-34140554)
[»] scaffold0231 (2 HSPs)
scaffold0231 (70-226)||(17521-17678)
scaffold0231 (226-264)||(17693-17731)
[»] scaffold0162 (2 HSPs)
scaffold0162 (120-226)||(23933-24039)
scaffold0162 (226-293)||(24054-24120)
[»] scaffold1186 (1 HSPs)
scaffold1186 (70-194)||(1947-2072)
[»] scaffold0369 (1 HSPs)
scaffold0369 (70-226)||(15616-15772)
[»] scaffold0005 (3 HSPs)
scaffold0005 (70-194)||(186196-186321)
scaffold0005 (301-340)||(171657-171696)
scaffold0005 (17-81)||(266111-266174)
[»] scaffold0414 (1 HSPs)
scaffold0414 (69-226)||(11159-11318)
[»] scaffold0203 (1 HSPs)
scaffold0203 (70-226)||(17940-18097)
[»] scaffold0032 (1 HSPs)
scaffold0032 (70-226)||(61848-62008)
[»] scaffold0516 (1 HSPs)
scaffold0516 (70-226)||(5305-5462)
[»] scaffold1128 (1 HSPs)
scaffold1128 (17-81)||(538-602)
[»] scaffold0679 (1 HSPs)
scaffold0679 (17-81)||(1531-1595)
[»] scaffold0676 (1 HSPs)
scaffold0676 (70-171)||(2831-2933)
[»] scaffold0815 (1 HSPs)
scaffold0815 (17-81)||(1493-1557)
[»] scaffold0247 (1 HSPs)
scaffold0247 (70-175)||(1022-1128)
[»] scaffold0505 (1 HSPs)
scaffold0505 (70-179)||(4878-4988)
[»] scaffold0220 (1 HSPs)
scaffold0220 (70-177)||(13893-14001)
[»] scaffold0097 (1 HSPs)
scaffold0097 (17-77)||(28864-28924)
[»] scaffold0072 (1 HSPs)
scaffold0072 (17-81)||(56871-56935)
[»] scaffold0431 (1 HSPs)
scaffold0431 (69-174)||(5578-5686)
[»] scaffold0061 (2 HSPs)
scaffold0061 (70-171)||(14586-14689)
scaffold0061 (70-171)||(23644-23747)
[»] scaffold0379 (1 HSPs)
scaffold0379 (70-175)||(10893-10999)
[»] scaffold0213 (2 HSPs)
scaffold0213 (74-174)||(19154-19255)
scaffold0213 (122-167)||(19115-19160)
[»] scaffold0007 (1 HSPs)
scaffold0007 (70-177)||(16419-16528)
[»] scaffold0555 (1 HSPs)
scaffold0555 (70-175)||(8746-8853)
[»] scaffold0191 (1 HSPs)
scaffold0191 (18-81)||(10732-10795)
[»] scaffold0174 (2 HSPs)
scaffold0174 (70-175)||(19801-19908)
scaffold0174 (70-123)||(5453-5506)
[»] scaffold0004 (6 HSPs)
scaffold0004 (17-81)||(322081-322145)
scaffold0004 (70-132)||(66072-66135)
scaffold0004 (70-172)||(75885-75989)
scaffold0004 (17-62)||(327788-327833)
scaffold0004 (70-126)||(111356-111412)
scaffold0004 (70-126)||(73083-73139)
[»] scaffold0706 (1 HSPs)
scaffold0706 (27-81)||(2470-2525)
[»] scaffold0594 (1 HSPs)
scaffold0594 (70-132)||(2236-2299)
[»] scaffold0017 (1 HSPs)
scaffold0017 (73-179)||(26669-26776)
[»] scaffold0328 (1 HSPs)
scaffold0328 (70-177)||(18640-18749)
[»] scaffold0139 (2 HSPs)
scaffold0139 (70-131)||(23525-23586)
scaffold0139 (120-174)||(40214-40268)
[»] scaffold0583 (1 HSPs)
scaffold0583 (17-81)||(500-564)
[»] scaffold0098 (1 HSPs)
scaffold0098 (70-175)||(40052-40159)
[»] scaffold0031 (1 HSPs)
scaffold0031 (70-175)||(127343-127450)
[»] scaffold0092 (1 HSPs)
scaffold0092 (70-171)||(38442-38543)
[»] scaffold0009 (2 HSPs)
scaffold0009 (17-59)||(248011-248053)
scaffold0009 (17-81)||(254502-254565)
[»] scaffold0462 (2 HSPs)
scaffold0462 (125-174)||(1264-1313)
scaffold0462 (125-174)||(6770-6819)
[»] scaffold0108 (1 HSPs)
scaffold0108 (70-123)||(6417-6470)
[»] scaffold0023 (1 HSPs)
scaffold0023 (17-54)||(152447-152484)
[»] scaffold0239 (2 HSPs)
scaffold0239 (17-81)||(6304-6367)
scaffold0239 (17-81)||(13587-13650)
[»] scaffold0125 (1 HSPs)
scaffold0125 (110-179)||(28493-28564)
[»] scaffold0086 (1 HSPs)
scaffold0086 (70-132)||(35186-35249)
[»] scaffold0730 (1 HSPs)
scaffold0730 (84-126)||(6519-6561)
[»] scaffold0058 (1 HSPs)
scaffold0058 (110-171)||(59695-59757)
[»] scaffold0298 (1 HSPs)
scaffold0298 (84-132)||(374-423)
[»] scaffold0026 (1 HSPs)
scaffold0026 (17-81)||(67233-67298)
[»] scaffold0002 (1 HSPs)
scaffold0002 (17-81)||(371403-371466)
[»] scaffold1939 (1 HSPs)
scaffold1939 (139-175)||(74-110)
[»] scaffold0430 (1 HSPs)
scaffold0430 (17-81)||(13663-13726)
[»] scaffold0261 (1 HSPs)
scaffold0261 (112-179)||(6461-6529)
[»] scaffold0192 (1 HSPs)
scaffold0192 (17-81)||(7608-7672)
[»] scaffold0190 (1 HSPs)
scaffold0190 (17-57)||(19238-19277)
[»] scaffold0148 (1 HSPs)
scaffold0148 (70-126)||(8840-8896)
[»] scaffold0076 (1 HSPs)
scaffold0076 (28-56)||(50810-50838)


Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 108 - 562
Target Start/End: Complemental strand, 16186927 - 16186472
Alignment:
Q  108 tgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctct 206  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16186927 tgtataattctgaaaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctct 16186828  T
Q  207 ttttcttcttctacccataaaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgttaatatttttgaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16186827 ttttcttcttctacccataaaagtgattattgtggatttaattggttttatttgtgctctatttgttgctgtaatttttgggtatgttaatatttttgaa 16186728  T
Q  307 ttcattattttcatgtgttaaattcgtaattgattcttagttatgttgtttgtcgatgatggcttcagtttctttgatcactttataatatcgtccttct 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16186727 ttcattattttcatgtgttaaattcgtaattgattcttagttatgttgtttgtcgatgatggcttcagtttctttgatcactttataatatcgtccttct 16186628  T
Q  407 ttatttgatcactttatctttgttgcttggttgttcaccgataattccaggtatcagtgcgatgaaccttttattataattgcttttaaaatcttttatg 506  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16186627 ttatttgatcactttacctttgttgcttggttgttcaccgataattccaggtatcagtgcgatgaaccttttattataattgcttttaaaatcttttatg 16186528  T
Q  507 atttagtcttggtacatatttgatgatttcttaaccgttcatgaaactgatgatgt 562  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16186527 atttagtcttggtacatatttgatgatttcttaaccgttcatgaaactgatgatgt 16186472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 15575649 - 15575806
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||| ||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |  |||||  ||||||||||||||||||||||    
T  15575649 taaggtaggggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtacttgttgttagttttgatgttatagaaatt 15575748  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  15575749 agggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 15575806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 43745708 - 43745551
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||| | ||||||||| |||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  43745708 taaggtaagggtgggactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 43745609  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  43745608 agagttagatttcattcataatcttttgtataatctctttttctacttctacccataa 43745551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 18874665 - 18874810
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa---gggtttaaccttatggttgttagtagttttgatgttatagaaa 166  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||||||||   |||||||||||| | ||||   |||||||||||||||||||||    
T  18874665 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaaaggggtttaaccttgtagttg---gtagttttgatgttatagaaa 18874761  T
Q  167 ttagggttagatttcattcataatctttcgtataatctctttttcttct 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18874762 ttagggttagatttcattcataatcttttgtataatctctttttcttct 18874810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 47095504 - 47095347
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||||  ||||||||||| | ||||||  ||| ||||||||||||||||||    
T  47095504 taaggtaagggtgggactagctttctctaataatgggttgaataattctgaaaaatggtttaaccttgtagttgttgttaggtttgatgttatagaaatt 47095405  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||| |||||||||||||||||| |||||| |||||||||| |||||||||||||    
T  47095404 agggttaaatttcattcataatcttttgtataaactctttttctacttctacccataa 47095347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 48212727 - 48212883
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa---gggtttaaccttatggttgttagtagttttgatgttatagaaa 166  Q
    |||||||||||| |||||||||||||| |||||| || ||||| ||||| ||||   ||||||||| || |  |||||  ||||||||||||||||||||    
T  48212727 taaggtaagggtgtgactagctttctccaataataggttgtatgattctaaaaaaaggggtttaacattgtaattgttgttagttttgatgttatagaaa 48212826  T
Q  167 ttagggttagatttcattcataatctttcgtataatctctttttcttcttctaccca 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48212827 ttagggttagatttcattcataatcttttgtataatctctttttctacttctaccca 48212883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 4690663 - 4690820
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||| |||  ||||| |||||||||||  |  | |||||||||||||||| |||||||||||| | ||||||| || |||||||||||||||||||    
T  4690663 taaggtaaaggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttattacttttgatgttatagaaatt 4690762  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||    
T  4690763 agggttagatttcattcataatcttttgtataatctcattttctacttctacccataa 4690820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 20252182 - 20252343
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||||||||||| ||||||||| || | ||||||| ||||||| ||||||||||||||    
T  20252182 taaggtaagggtaggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttattagttttaatgttatagaaatt 20252281  T
Q  169 agggttagat----ttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||| ||||||    |||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  20252282 aggattagatttcattcattcataatcttttgtataatctatttttctacttctacccataa 20252343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 19195663 - 19195562
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatta 169  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||||||||||||||||||||||| | ||||||  ||||||||||||||||| |||||    
T  19195663 taaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaagggtttaaccttgtagttgttgttagttttgatgttataggaatta 19195564  T
Q  170 gg 171  Q
    ||    
T  19195563 gg 19195562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 708429 - 708537
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||| ||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||| | |||| |  ||||||||||||||||| ||||    
T  708429 taaggtaggggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgctgttagttttgatgttataggaatt 708528  T
Q  169 agggttaga 177  Q
    ||| |||||    
T  708529 aggtttaga 708537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 11390980 - 11391044
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  11390980 aagagcaagtagagccaagaactgattttgctgtgcatttctttctattaaattaaggtaagggt 11391044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 43276743 - 43276848
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagta-gttttgatgttatagaaat 167  Q
    |||||||||||||  ||||| ||||||||||||||||| |||||||||||||||| ||||||||||| | ||||||| || ||||||||||| ||| |||    
T  43276743 ttaaggtaagggtgggactaactttctctaataatgggttgtataattctgaaaatggtttaaccttgtagttgttaataggttttgatgttgtag-aat 43276841  T
Q  168 tagggtt 174  Q
    |||||||    
T  43276842 tagggtt 43276848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 25943319 - 25943213
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttg-ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| |||||  || |||||| ||||||||| || | |||| || ||||||||||||||||||||||    
T  25943319 taaggtaagggtgggactagctttctctaataatgggttgtatgtttttgaaaaggggtttaacatt-tcgttgttttgtagttttgatgttatagaaat 25943221  T
Q  168 tagggtta 175  Q
    ||||||||    
T  25943220 tagggtta 25943213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 2261 - 2323
Alignment:
Q  20 agcaagtagagccaagaactgatttt-gctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  2261 agcaagtagagccaagaactgatttttgctgtacatttctttctgcaaaattaaggtaagggt 2323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 8488094 - 8488169
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattct-gaaaagggtttaaccttatggttgtt 144  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||| ||||||    
T  8488094 taaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttatagttgtt 8488169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 38299800 - 38299738
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaa 131  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  38299800 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaa 38299738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 58413 - 58517
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatta 169  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||| ||  |||||||||||||| ||||||||    
T  58413 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgtt-ttgttagttttgatgttaaagaaatta 58511  T
Q  170 gggtta 175  Q
    ||||||    
T  58512 gggtta 58517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 8513753 - 8513828
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattct-gaaaagggtttaaccttatggttgtt 144  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||  |||||||||||||||| | ||||||    
T  8513753 taaggtaagggtgggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgtt 8513828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 15700750 - 15700840
Alignment:
Q  85 actagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 175  Q
    |||||||||||||||||||||| |||||  |||| ||||||| || | | | | ||||||  ||||||| |||||||||||||||||||||    
T  15700750 actagctttctctaataatgggttgtatggttctaaaaaggggtttaacatgtagttgttgttagttttaatgttatagaaattagggtta 15700840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 3287796 - 3287743
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa 123  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||||||||||    
T  3287796 taaggtaagggtgagactagctttctctaataataggttgtataattctgaaaa 3287743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 8930765 - 8930872
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  |||||  |||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  8930765 taaggtaagggtgggactacatttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 8930864  T
Q  168 tagggtta 175  Q
    ||||||||    
T  8930865 tagggtta 8930872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 13315082 - 13315138
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||||||||||  ||||| ||||||||||||||||| ||||| |||||||||||||    
T  13315082 taaggtaagggtgagactatctttctctaataatgggttgtatgattctgaaaaggg 13315138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 14287214 - 14287278
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| |   ||||||||||||||||| |||| ||||| ||||||||||||    
T  14287214 aagagcaagtagagccaaggatcaattttgctgtgcatttccttctgcaaaactaaggtaagggt 14287278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 16842998 - 16843040
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctt 59  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  16842998 aagagcaagtagagccaagagctgaatttgctgtgcatttctt 16843040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 19283109 - 19283055
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa 123  Q
    |||||||||||||  ||||| |||||||||| |||||| ||||||||||||||||    
T  19283109 ttaaggtaagggtgagactaactttctctaagaatgggttgtataattctgaaaa 19283055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 33556105 - 33556211
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||| |||||||  ||||||||||||||||||||||| ||||| ||||| |||| ||||||||| |  || |  || ||   ||||||||||||||||||    
T  33556105 taagataagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagtttgatgttatagaaatt 33556204  T
Q  169 agggtta 175  Q
    |||||||    
T  33556205 agggtta 33556211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 13744510 - 13744614
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatta 169  Q
    ||||||||||||  ||||||||||||||||||||||| | ||| ||||| ||||||| || | | | | ||| ||  || |||| |||||||||||||||    
T  13744510 taaggtaagggtgggactagctttctctaataatgggttttatgattctaaaaaggggtttaacatgttgtt-ttgttatttttaatgttatagaaatta 13744608  T
Q  170 gggtta 175  Q
    ||||||    
T  13744609 gggtta 13744614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 15720832 - 15720724
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaa 166  Q
    ||||||||| |||  |||||||||||||| |||||||| ||||| ||||| ||||||| || | | | | ||||  ||  ||||||||||||||||||||    
T  15720832 ttaaggtaaaggtgggactagctttctctcataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaa 15720733  T
Q  167 ttagggtta 175  Q
    ||| |||||    
T  15720732 ttatggtta 15720724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 18570699 - 18570592
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattct-gaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaa 166  Q
    ||||||||||||  ||||||||||||||||||||||| ||||  ||||| |||| |||||||| | ||| ||||  ||  |||||||||||||||||||     
T  18570699 taaggtaagggtgagactagctttctctaataatgggttgtaagattctagaaaggggtttaa-catattgttgttttgttagttttgatgttatagaag 18570601  T
Q  167 ttagggtta 175  Q
    ||| |||||    
T  18570600 ttatggtta 18570592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 14280748 - 14280812
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||| ||| |   ||||||||||||||||| |||| ||||| ||||||||||||    
T  14280748 aagagcaagtagagcaaaggatcaattttgctgtgcatttccttctgcaaaactaaggtaagggt 14280812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 36300641 - 36300697
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    |||||||| |||  ||||||||||||||||||||||| ||||| ||||| |||||||    
T  36300641 taaggtaaaggtgagactagctttctctaataatgggttgtatgattctaaaaaggg 36300697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 16250222 - 16250285
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||  ||||| ||||||||||||||| | ||||||||| || |||||||||||||    
T  16250222 taaggtaagggtgggactaactttctctaataatgagttgtataattttgaaaaagggtttaac 16250285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 47095332 - 47095266
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  47095332 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 47095266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 15307562 - 15307522
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctct 266  Q
    ||||||||||||||| |||||||||||  ||||||||||||    
T  15307562 aaagtgattattgtgaatttaattggtgaaatttgtgctct 15307522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 18874833 - 18874869
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtg 262  Q
    |||||||||||||||||||||||||||  ||||||||    
T  18874833 aaagtgattattgtggatttaattggtgaaatttgtg 18874869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 6e-63; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 23199206 - 23199364
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaat 167  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||  ||||||||||| | |||||||||||||||||||||||||||||    
T  23199206 ttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaatggtttaaccttgtagttgttagtagttttgatgttatagaaat 23199305  T
Q  168 tagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23199306 tagggttagatttcattcataatcttttgtataatctctttttcttcttctacccataa 23199364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 70 - 264
Target Start/End: Complemental strand, 18744926 - 18744723
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||    
T  18744926 taaggtaagggtgggactaactttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaatt 18744827  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa--------aagtgattattgtggatttaattggtttaatttg 260  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||        | ||||||||||||||||||||||||  ||||||    
T  18744826 agggttagatttcattcataatcttttgtataatctctttttctacttctacccataagtgcctatatgtgattattgtggatttaattggtgaaatttg 18744727  T
Q  261 tgct 264  Q
    ||||    
T  18744726 tgct 18744723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 660827 - 660685
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcat 183  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||||||  |||||||||||||||||||||| ||||||||||||||    
T  660827 gactagctttctctaataaggggttgtataattctgaaaaaggtttaaccttgtagttgttgttagttttgatgttatagaaatttgggttagatttcat 660728  T
Q  184 tcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  660727 tcataatcttttgtataatctctttttctacttctacccataa 660685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 1627064 - 1627225
Alignment:
Q  67 aattaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa--gggtttaaccttatggttgttagtagttttgatgttataga 164  Q
    |||||| ||||||||  ||||||||||||||||||||| | ||||||||||| ||||  ||||||| |||| |  || ||  ||||||||||||||||||    
T  1627064 aattaacgtaagggtgggactagctttctctaataatgagttgtataattctaaaaaaagggtttacccttgtatttattgttagttttgatgttataga 1627163  T
Q  165 aattagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  1627164 aattagggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 1627225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19077567 - 19077503
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19077567 aagagcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 19077503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 16063803 - 16063701
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattct-gaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||  |||||||||||||||| | ||||||  ||||||||||||||||| ||||    
T  16063803 taaggtaagggtgggactacctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttgttagttttgatgttataggaatt 16063704  T
Q  169 agg 171  Q
    |||    
T  16063703 agg 16063701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 31251842 - 31251903
Alignment:
Q  20 agcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||    
T  31251842 agcaagtagagccaagaactgattttgctgtgcatttttttctgtaaaattaaggtaagggt 31251903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 21504141 - 21504081
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagattt 180  Q
    ||||||||||||  || | ||||||||||||||||||||||||||||||||||||| ||||    
T  21504141 aaaagggtttaagtttgtagttgttagtagttttgatgttatagaaattagggttaaattt 21504081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 27634970 - 27635034
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| |||   ||||||||||||    
T  27634970 aagaacaagtagagccaagaactgattttgttgtgcatttctttctgcaattataaggtaagggt 27635034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 32607316 - 32607423
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  32607316 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 32607415  T
Q  168 tagggtta 175  Q
    ||| ||||    
T  32607416 tagagtta 32607423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 6551290 - 6551392
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| |||||||||||  |  | |||||||||||||||| |||||||||||| | ||||||  ||| ||||||||||||| ||||    
T  6551290 taaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttgttagatttgatgttataggaatt 6551389  T
Q  169 agg 171  Q
    |||    
T  6551390 agg 6551392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 26651435 - 26651371
Alignment:
Q  17 aagagcaagtagagccaagaactga-ttttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||| |||| |||||||||||||    
T  26651435 aagagcaagtagagccaagaattgatttttgctgtgcatttc-ttctgcaaatttaaggtaagggt 26651371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 26923020 - 26922956
Alignment:
Q  17 aagagcaagtagagccaagaactga-ttttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||| |||| |||||||||||||    
T  26923020 aagagcaagtagagccaagaattgatttttgctgtgcatttc-ttctgcaaatttaaggtaagggt 26922956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 21398644 - 21398752
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa--gggtttaac--cttatggttgttagtagttttgatgttatagaa 165  Q
    ||||||||||||  || |||||||||||||||||||| ||||| ||||| ||||  |||||||||   || | ||| ||  |||||||||||||||||||    
T  21398644 taaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaagggggtttaacatgtttttgtt-ttgttagttttgatgttatagaa 21398742  T
Q  166 attagggtta 175  Q
    ||||||||||    
T  21398743 attagggtta 21398752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 24058637 - 24058574
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||   |||||||||||||||| |||| |||  |||||||||||||    
T  24058637 aagagcaagtagagccaagaaccatttttgctgtgcatttc-ttctgcaattttaaggtaagggt 24058574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 1627240 - 1627306
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  1627240 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 1627306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 23199379 - 23199445
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  23199379 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 23199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 22111951 - 22111923
Alignment:
Q  147 tagttttgatgttatagaaattagggtta 175  Q
    |||||||||||||||||||||||||||||    
T  22111951 tagttttgatgttatagaaattagggtta 22111923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 23543988 - 23544024
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgca 53  Q
    |||||||||||||||||||||||||  ||||||||||    
T  23543988 aagagcaagtagagccaagaactgaaattgctgtgca 23544024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 24068231 - 24068175
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtag-ttttgatgttatagaaattagggtta 175  Q
    |||||||||||||||| | ||||||| ||| ||||||||||| ||| ||||||||||    
T  24068231 aaaagggtttaaccttgtagttgttaataggttttgatgttaaagagattagggtta 24068175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 21335266 - 21335423
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||    
T  21335266 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaatt 21335365  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  21335366 atggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 21335423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 21315476 - 21315633
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||    
T  21315476 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaatt 21315575  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |  ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  21315576 attgttagatttcattcataatcttttgtataatctctttttctacttctacccataa 21315633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 21369345 - 21369187
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||| |||||||||||| |||||| |||||||||||||||| |||||||||||| | |||  || ||||||||||||||||||||||    
T  21369345 taaggtaagggtgggacaagctttctctaacaatgggttgtataattctgaaaaagggtttaaccttgtagtttatattagttttgatgttatagaaatt 21369246  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataaa 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||    
T  21369245 agggttagatttcattcataatcttttgtataatctctttttctactactacccataaa 21369187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 23610678 - 23610546
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||| ||||||  ||||||||||| | ||||||  | ||||||||||||||||||||    
T  23610678 taaggtaagggtgggactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttctagttgttgtttgttttgatgttatagaaatt 23610579  T
Q  169 agggttagatttcattcataatctttcgtataa 201  Q
    |||||||||||| ||||||||||||| ||||||    
T  23610578 agggttagatttaattcataatcttttgtataa 23610546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 20725095 - 20725035
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaa 77  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  20725095 aagaacaagtagagccaagaactgattttgctgtgcatttctttctgcaaaactaaggtaa 20725035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 28344988 - 28345092
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatta 169  Q
    |||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||| || | | | | ||| ||  |||||| ||||||||||||||||    
T  28344988 taagataagggtgtgactagctttctctaataatgggctgtatgattctaaaaaggggtttaacatgttgtt-ttgttagtttcgatgttatagaaatta 28345086  T
Q  170 gggtta 175  Q
    ||||||    
T  28345087 gggtta 28345092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 28970362 - 28970427
Alignment:
Q  17 aagagcaagtagagccaa-gaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||| |||   ||||||||||||    
T  28970362 aagaacaagtagagccaaagaactgattttgctgtgcatttctttctgcaattctaaggtaagggt 28970427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 23801548 - 23801492
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| |||||||    
T  23801548 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggg 23801492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 25584302 - 25584367
Alignment:
Q  110 tataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 174  Q
    |||||||||||||| |||||||||||| | |||| |  ||||||||||||||||||| ||||||||    
T  25584302 tataattctgaaaaagggtttaaccttgtcgttgatgatagttttgatgttatagaagttagggtt 25584367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 28652593 - 28652662
Alignment:
Q  112 taattctgaaaa-gggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 179  Q
    |||||||||||| ||||||| ||||  | ||||||  |||||||||||||||||||||||||||||||||    
T  28652593 taattctgaaaaagggtttagcctttgtagttgttgttagttttgatgttatagaaattagggttagatt 28652662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 2106654 - 2106590
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| |    |||||||||| ||||| |||| ||||||||||||||||||    
T  2106654 aagagcaagtagagccaaggatcatttttgctgtgtatttccttctgcaaaattaaggtaagggt 2106590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 19702579 - 19702618
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcattt 56  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  19702579 aagaacaagtagagtcaagaactgattttgctgtgcattt 19702618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 24944412 - 24944357
Alignment:
Q  27 agagccaag-aactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||  ||||||||||||    
T  24944412 agagccaaggaaccgattttgctgtgcatttctttctgcaaatctaaggtaagggt 24944357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 149501 - 149610
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa----gggtttaac--cttatggttgttagtagttttgatgttatag 163  Q
    ||||||||||||   |||||||||||||||||||| | ||||||||||| ||||    |||||||||   || | ||| ||  |||||||||||||||||    
T  149501 taaggtaagggtggaactagctttctctaataatgagttgtataattctaaaaaaaaggggtttaacatgttgtcgtt-ttgttagttttgatgttatag 149599  T
Q  164 aaattagggtt 174  Q
    |||||||||||    
T  149600 aaattagggtt 149610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 19647246 - 19647180
Alignment:
Q  110 tataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 175  Q
    |||||||||||||| |||||||| ||| | ||||||| ||||||||||  ||||||| |||||||||    
T  19647246 tataattctgaaaaagggtttaatcttgtagttgttaatagttttgattgtatagaagttagggtta 19647180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 20005971 - 20006072
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||| |||| |||| ||| | | |||||||||||||| ||||||||  || | ||||||| || |||||||||||||||| ||    
T  20005971 taaggtaagggtgggactagccttctttaatcatgag-tctataattctgaaaaagggtttaattttgttgttgttaataattttgatgttatagaagtt 20006069  T
Q  169 agg 171  Q
    |||    
T  20006070 agg 20006072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 21369173 - 21369135
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgct 264  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  21369173 aaagtgattattgtggatttaattggtgaaatttgtgct 21369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 24653382 - 24653344
Alignment:
Q  43 tttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  24653382 tttgctgtgcatttctttctgcaaaactaaggtaagggt 24653344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 25584190 - 25584218
Alignment:
Q  147 tagttttgatgttatagaaattagggtta 175  Q
    |||||||||||||||||||||||||||||    
T  25584190 tagttttgatgttatagaaattagggtta 25584218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 25589744 - 25589807
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||| ||||||  |||||||| |||||||||| |||| |||  |||||||||||||    
T  25589744 aagagcaagtagatccaagatttgattttgttgtgcatttc-ttctgcaattttaaggtaagggt 25589807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 84 - 293
Target Start/End: Complemental strand, 12710905 - 12710698
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttca 182  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||||| ||| | ||||||  ||||||||||||||||||||||| ||||||||||||    
T  12710905 gactagctttctctaatattgggttgtataattctgaaaaagggtttaatcttgtagttgttgttagttttgatgttatagaaattaaggttagatttca 12710806  T
Q  183 ttcataatctttcgtataatctctttttcttcttctacccataaaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatt 282  Q
    |||||||||||| ||||||||||||||||| |||||||||||  |||||||||||||| |||||||||||  |||| ||||| ||| | ||| || |||     
T  12710805 ttcataatcttttgtataatctctttttctacttctacccat--aagtgattattgtgaatttaattggtgaaattcgtgct-tatgttttgatgcaatg 12710709  T
Q  283 tttgggtatgt 293  Q
    |||||||||||    
T  12710708 tttgggtatgt 12710698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 28476734 - 28476891
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  |||||| |||||||||||||| | |||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  28476734 taaggtaagggtgggactagatttctctaataatgagttgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 28476833  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  28476834 agggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 28476891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 24719524 - 24719667
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttca 182  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| ||||| ||||||    
T  24719524 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaattaaggttaaatttca 24719623  T
Q  183 ttcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||| ||||||||| ||||||| |||||||||||||    
T  24719624 ttcataatcttttgtataatctttttttctacttctacccataa 24719667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 11946545 - 11946481
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11946545 aagagcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 11946481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 43629247 - 43629308
Alignment:
Q  20 agcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43629247 agcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 43629308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 38056672 - 38056780
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||| ||||||| |||||||||||| |||||||||||||||| | ||||||  ||||||||||||| | | ||||    
T  38056672 taaggtaagggtgggactagctttctctagtaatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttttgggaatt 38056771  T
Q  169 agggttaga 177  Q
    ||| |||||    
T  38056772 aggtttaga 38056780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 20823499 - 20823563
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||  ||||||||||||    
T  20823499 aagagcaagtagagccaagaaccgatttttctgtgcatttctttctacaaatctaaggtaagggt 20823563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 34392820 - 34392713
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    |||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  34392820 taaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 34392721  T
Q  168 tagggtta 175  Q
    ||||||||    
T  34392720 tagggtta 34392713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 50544924 - 50544849
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgtt 144  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||    
T  50544924 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 50544849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 8275989 - 8276097
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||||||| ||||||||||| |||||||||| |  ||||||||||| |||||||||||||||| | ||||||  || |||||||||| | | ||||    
T  8275989 taaggtaagggtgtgactagctttatctaataatgagtggtataattctgaaaaagggtttaaccttgtagttgttgatatttttgatgttttgggaatt 8276088  T
Q  169 agggttaga 177  Q
    ||| |||||    
T  8276089 aggtttaga 8276097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 17901794 - 17901857
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  17901794 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaac 17901857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 22145664 - 22145741
Alignment:
Q  68 attaaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgtt 144  Q
    ||||||||||||||  ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||| | ||||||    
T  22145664 attaaggtaagggtgggactaactttctctaataatgggttgtttaattctgaaaaagggtttaaccttgtagttgtt 22145741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 8306658 - 8306552
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaac--cttatggttgttagtagttttgatgttatagaaa 166  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||||||| |||| |||||||||   || | ||| ||  ||||||||||||||||||||    
T  8306658 taaggtaagagtgggactagctttctctaataatgggttgtataattctaaaaaggggtttaacatgttgtcgtt-ttgttagttttgatgttatagaaa 8306560  T
Q  167 ttagggtt 174  Q
    ||||||||    
T  8306559 ttagggtt 8306552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 20837310 - 20837374
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||  |||  ||||||||||||    
T  20837310 aagagcaagtagagccaagaaccgatttttctgtgcatttctttctgaaaatctaaggtaagggt 20837374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 24007225 - 24007330
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaacctta-tggttgttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  |||||||||||||| ||||||   ||||||||||||||||  |||||||||||  | ||||||  |||||||||||||||||| ||    
T  24007225 taaggtaagggtgggactagctttctctgataatgat-tgtataattctgaaaaaaggtttaacctttgtagttgttgttagttttgatgttatagagat 24007323  T
Q  168 tagggtt 174  Q
    |||||||    
T  24007324 tagggtt 24007330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 20588691 - 20588581
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattct---gaaaagggtttaac--cttatggttgttagtagttttgatgttatag 163  Q
    |||||||||||||  || |||||||||||||||||||| ||||| |||||    |||||||||||||   || | ||| ||  |||||||||||||||||    
T  20588691 ttaaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaaaaagggtttaacatgtttttgtt-ttgttagttttgatgttatag 20588593  T
Q  164 aaattagggtta 175  Q
    ||||||||||||    
T  20588592 aaattagggtta 20588581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 20593229 - 20593119
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattct---gaaaagggtttaac--cttatggttgttagtagttttgatgttatag 163  Q
    |||||||||||||  || |||||||||||||||||||| ||||| |||||    |||||||||||||   || | ||| ||  |||||||||||||||||    
T  20593229 ttaaggtaagggtgggattagctttctctaataatgggttgtatgattctaaaaaaaagggtttaacatgtttttgtt-ttgttagttttgatgttatag 20593131  T
Q  164 aaattagggtta 175  Q
    ||||||||||||    
T  20593130 aaattagggtta 20593119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 635004 - 635057
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa 123  Q
    ||||||||||||  |||||||||||||||||||| || ||||||||||| ||||    
T  635004 taaggtaagggtgagactagctttctctaataataggttgtataattctaaaaa 635057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 39061333 - 39061268
Alignment:
Q  110 tataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 174  Q
    ||||||||||||||  ||||||||||| | ||||||  ||||||||||||||||||| ||||||||    
T  39061333 tataattctgaaaaaaggtttaaccttgtagttgttgatagttttgatgttatagaatttagggtt 39061268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 6834213 - 6834165
Alignment:
Q  85 actagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    |||||||||||||||||||| | |||||||||||| |||||||||||||    
T  6834213 actagctttctctaataatgagttgtataattctgaaaaagggtttaac 6834165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 45499594 - 45499546
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattct 118  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  45499594 taaggtaagggtgagactagctttctctaataatgggttgtatgattct 45499546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 16882638 - 16882703
Alignment:
Q  17 aagagcaagtagagccaag--aactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||  ||| ||||| | ||||||||||||||| ||||| ||||||||||||    
T  16882638 aagagcaagtagagccaagggaaccgattt-gttgtgcatttctttctgcaaaactaaggtaagggt 16882703  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 35895151 - 35895092
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggttt 129  Q
    ||||||| ||||  |||||||||| |||||||||||| ||||| |||||||||| |||||    
T  35895151 taaggtatgggtaggactagctttatctaataatgggttgtatgattctgaaaaaggttt 35895092  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 47485150 - 47485108
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctt 59  Q
    ||||||||| ||||||||||  |||||||||||||||||||||    
T  47485150 aagagcaagcagagccaagatttgattttgctgtgcatttctt 47485108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 20595208 - 20595271
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| |   ||||||||||||| ||| |||| ||||| ||||||||||||    
T  20595208 aagagcaagtagagccaaggatcaattttgctgtgca-ttccttctgcaaaactaaggtaagggt 20595271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 40390152 - 40390096
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtag-ttttgatgttatagaaattagggtta 175  Q
    |||||||||||||||| | ||||||| ||| ||||||||||| ||| ||||||||||    
T  40390152 aaaagggtttaaccttgtagttgttaataggttttgatgttaaagatattagggtta 40390096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 293
Target Start/End: Original strand, 2453 - 2692
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag---ggtttaaccttatggttgttagtagttttgatgttatagaa 165  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||    ||||||||||| | || |||| |||||||||||||||||||    
T  2453 ttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaaaatggtttaaccttgtagtcgttattagttttgatgttatagaa 2552  T
Q  166 attagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa-------------aagtgattattgtggatttaattggt 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||             ||||||||||||||||||||||||||    
T  2553 attagggttagatttcattcataatcttttgtataatctctttttctacttctacccataagtgtctacgtataaagtgattattgtggatttaattggt 2652  T
Q  253 ttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
      |||||||||| ||| | ||| || ||| |||||||||||    
T  2653 gaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 2692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 18327 - 18170
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||  | |||||||| |||||||||||    
T  18327 taaggtaagggtgtgactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttggttttgattttatagaaatt 18228  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  18227 agggttagatttcattcataatcttctgtataatctctttttctacttctacccataa 18170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 18816295 - 18816452
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  18816295 taaggtaagggtgggactagctttctctaaaaatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 18816394  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  18816395 agggttagatttcattcataatcttttgtataatctctttttctacttctactcataa 18816452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 21514744 - 21514586
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaat 167  Q
    |||||||||||||  |||||| |||||||||||||| | ||||||||||| |||| |||||||||||| | ||||||  |||||||||||||||||||||    
T  21514744 ttaaggtaagggtgggactagatttctctaataatgagttgtataattcttaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaat 21514645  T
Q  168 tagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  21514644 tagggttagatttcattcataatcttttgtataatctctttttatacttctacccataa 21514586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 70 - 264
Target Start/End: Original strand, 4380617 - 4380819
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| |||||||||||  |  | |||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  4380617 taaggtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 4380716  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccata-------aaagtgattattgtggatttaattggtttaatttgt 261  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||  | ||       ||||||||||||||| |||||||||||  |||||||    
T  4380717 agggttagatttcattcataatcttttgtataatctctttttctacttctaagcctatttgtataaagtgattattgtgaatttaattggtgaaatttgt 4380816  T
Q  262 gct 264  Q
    |||    
T  4380817 gct 4380819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 36732412 - 36732514
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||||| | ||||||  ||||||||||||||||| ||||    
T  36732412 taaggtaagggtgtgactagctttctctaataatgggttgtataattctgaaaaagagtttaaccttgtagttgttgttagttttgatgttataggaatt 36732511  T
Q  169 agg 171  Q
    |||    
T  36732512 agg 36732514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 44474648 - 44474713
Alignment:
Q  16 aaagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44474648 aaagagcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 44474713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 22208321 - 22208216
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagta-gttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||| || ||||||||||| ||| |||    
T  22208321 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtag-aat 22208223  T
Q  168 tagggtt 174  Q
    |||||||    
T  22208222 tagggtt 22208216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 21399769 - 21399662
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  21399769 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 21399670  T
Q  168 tagggtta 175  Q
    ||||||||    
T  21399669 tagggtta 21399662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 21794262 - 21794155
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  21794262 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 21794163  T
Q  168 tagggtta 175  Q
    ||||||||    
T  21794162 tagggtta 21794155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 69 - 175
Target Start/End: Complemental strand, 18834475 - 18834371
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||||||||  ||||||||||||||||||||||  ||||| ||||| ||| ||||||||| |  ||  | ||  ||||||||||||||||||||||    
T  18834475 ttaaggtaagggtgggactagctttctctaataatggattgtatgattctaaaaggggtttaacatgttg--ttttgttagttttgatgttatagaaatt 18834378  T
Q  169 agggtta 175  Q
    |||||||    
T  18834377 agggtta 18834371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 12577931 - 12577826
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaacctt-atggttgttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||| |||||||||||||| |  |||||||||| ||||| |||||||||||| || ||||||  |||||||||||||||||| ||    
T  12577931 taaggtaagggtgggactaactttctctaataatagt-tgtataattccgaaaaagggtttaacctttatagttgttgttagttttgatgttatagagat 12577833  T
Q  168 tagggtt 174  Q
    |||||||    
T  12577832 tagggtt 12577826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 21676593 - 21676704
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaa-agggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||| ||||||||||||| | ||||||| ||||| |||||||||| || | ||||||  |||||||||| |||||||||||    
T  21676593 taaggtaagggtgggactagctt-ctctaataatgggtt-tataattatgaaatagggtttaactttgtagttgttgatagttttgatattatagaaatt 21676690  T
Q  169 agggttagatttca 182  Q
    ||| ||| ||||||    
T  21676691 aggtttaaatttca 21676704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 22483834 - 22483775
Alignment:
Q  74 gtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  22483834 gtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaac 22483775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 22345216 - 22345160
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| |||| ||||||||    
T  22345216 taaggtaagggtgggactagctttctctaataatgggttgtatgattccgaaaaggg 22345160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 22356876 - 22356820
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| |||| ||||||||    
T  22356876 taaggtaagggtgggactagctttctctaataatgggttgtatgattccgaaaaggg 22356820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 22258305 - 22258372
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataatt-ctgaaaagggtttaacctt 135  Q
    |||||||||||||  ||||||||||||||||||||| | ||||||||| |  ||||||||||||||||    
T  22258305 ttaaggtaagggtgagactagctttctctaataatgagttgtataattccaaaaaagggtttaacctt 22258372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 21514571 - 21514533
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgct 264  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  21514571 aaagtgattattgtggatttaattggtgaaatttgtgct 21514533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 29298161 - 29298203
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctt 59  Q
    |||||||||||||||||||||||||  ||| ||||||||||||    
T  29298161 aagagcaagtagagccaagaactgaaattgttgtgcatttctt 29298203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 29304716 - 29304758
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctt 59  Q
    |||||||||||||||||||||||||  ||| ||||||||||||    
T  29304716 aagagcaagtagagccaagaactgaaattgttgtgcatttctt 29304758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 18023570 - 18023619
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||||||  ||||| |||||||||||| |||||||||||||    
T  18023570 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaac 18023619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 22610267 - 22610371
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggt-tgttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||| ||||||||||||||| | ||||| ||||| |||| |||||||||   ||| | | ||  |||||||||||||||||||||    
T  22610267 taaggtaagggtgggactaactttctctaataatgagttgtatgattctaaaaaggggtttaac---atgttattttgttagttttgatgttatagaaat 22610363  T
Q  168 tagggtta 175  Q
    || |||||    
T  22610364 tatggtta 22610371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 38184926 - 38184975
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||||||  ||||| |||||||||||| |||||||||||||    
T  38184926 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaac 38184975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 23884144 - 23884116
Alignment:
Q  147 tagttttgatgttatagaaattagggtta 175  Q
    |||||||||||||||||||||||||||||    
T  23884144 tagttttgatgttatagaaattagggtta 23884116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 70 - 219
Target Start/End: Complemental strand, 17208576 - 17208426
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg-tttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||||||||||| || ||||||||| | ||||||  ||||||||||||||||||||||    
T  17208576 taaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaaggatttaaccttgtagttgttgttagttttgatgttatagaaatt 17208477  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttcta 219  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17208476 agggttagatttcattcataatcttttgtataatctctttttcttcttcta 17208426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 14520498 - 14520341
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||| ||||  ||||||||||| | ||||||  |||||||||||||||| |||||    
T  14520498 taaggtaagggtgggactagctttctttaataatgggttgtataattctaaaaaaaggtttaaccttgtagttgttgttagttttgatgttataaaaatt 14520399  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  14520398 agggttaaatttcactcataatcttttgtataatctctttttctacttctacccataa 14520341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 24547252 - 24547095
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagg-gtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||||| |  ||||| ||||||||||||||||| ||||| ||||| |||||| ||||||| |  || |  || ||   ||||||||||||||||||    
T  24547252 taaggtaaggatgagactatctttctctaataatgggttgtatgattctaaaaaggagtttaacatgttgttgttttgttagtttgatgttatagaaatt 24547153  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  24547152 agggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 24547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 5842979 - 5842915
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5842979 aagagcaagtagagccaagaactgattttgctgtgcatttctttctataaaattaaggtaagggt 5842915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 24549033 - 24549108
Alignment:
Q  151 tttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||    
T  24549033 tttgatgttatagaaattagggttagatttcattcataatattttgtacaatctctttttctacttctacccataa 24549108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 45219348 - 45219408
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaa 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45219348 aagagcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaa 45219408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 12960495 - 12960559
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  12960495 aagaacaagtagagccaagaactgattttgctgtgcatttctttctgcaaaactaaggtaagggt 12960559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 14152399 - 14152504
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagta-gttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||| | ||||| |||||| |||||||||||||||| | |||||||||| ||||||||||| ||| |||    
T  14152399 taaggtaagggtgggactagctttctctaataatgagttgtatcattctgaaaaagggtttaaccttgtagttgttagtaggttttgatgttgtag-aat 14152497  T
Q  168 tagggtt 174  Q
    |||||||    
T  14152498 tagggtt 14152504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 29907691 - 29907582
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatg-ttatagaaat 167  Q
    ||||||||||||  |||||||||||| ||||| |||| |||||||||||| |||||||||||||||| | ||||||  ||| ||||||| ||| ||||||    
T  29907691 taaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaat 29907592  T
Q  168 tagggttaga 177  Q
    ||||||||||    
T  29907591 tagggttaga 29907582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 29948857 - 29948748
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatg-ttatagaaat 167  Q
    ||||||||||||  |||||||||||| ||||| |||| |||||||||||| |||||||||||||||| | ||||||  ||| ||||||| ||| ||||||    
T  29948857 taaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaat 29948758  T
Q  168 tagggttaga 177  Q
    ||||||||||    
T  29948757 tagggttaga 29948748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 29998011 - 29997902
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatg-ttatagaaat 167  Q
    ||||||||||||  |||||||||||| ||||| |||| |||||||||||| |||||||||||||||| | ||||||  ||| ||||||| ||| ||||||    
T  29998011 taaggtaagggtgggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaat 29997912  T
Q  168 tagggttaga 177  Q
    ||||||||||    
T  29997911 tagggttaga 29997902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 6156762 - 6156656
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggt-tgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| ||| ||||||||| |  || | | ||  ||||||||||||||||||||||    
T  6156762 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaatt 6156663  T
Q  169 agggtta 175  Q
    |||||||    
T  6156662 agggtta 6156656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 54875473 - 54875581
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaa 166  Q
    |||||||||||||  ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  ||||||||||||||||||||    
T  54875473 ttaaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaa 54875572  T
Q  167 ttagggtta 175  Q
    |||||||||    
T  54875573 ttagggtta 54875581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 14641548 - 14641656
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattct-gaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  || |||||||||||||||||||| |||||||||||  |||||||||||||||| | ||||||  |||| |||||||| | | ||||    
T  14641548 taaggtaagggtgggattagctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttgttagtattgatgttttgggaatt 14641647  T
Q  169 agggttaga 177  Q
    ||| |||||    
T  14641648 aggtttaga 14641656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 2841506 - 2841613
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggt-tgttagtagttttgatgttatagaaat 167  Q
    |||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |  || | | ||  |||||||||||||||||||||    
T  2841506 taaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaagaggtttaacatgttgttgttttgttagttttgatgttatagaaat 2841605  T
Q  168 tagggtta 175  Q
    ||| ||||    
T  2841606 tagagtta 2841613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 22841283 - 22841390
Alignment:
Q  74 gtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttg-----ttagtagttttgatgttatagaaat 167  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||| | || ||||     ||  ||||||||| |||||||||||    
T  22841283 gtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatgattgttgttgttttgttagttttgaggttatagaaat 22841382  T
Q  168 tagggtta 175  Q
    ||||||||    
T  22841383 tagggtta 22841390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 3527157 - 3527261
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttatagaaatta 169  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||| | ||||||| || | | | | ||| ||  |||||||||||||||||||||||    
T  3527157 taaggtaagggtgggactagctttctctaataatgggttgtatgattttaaaaaggggtttaacatgttgtt-ttgttagttttgatgttatagaaatta 3527255  T
Q  170 gggtta 175  Q
    ||||||    
T  3527256 gggtta 3527261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 12724254 - 12724318
Alignment:
Q  17 aagagcaagtagagccaagaactga-ttttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||    
T  12724254 aagagcaagtagagccaagaactgatttttgctgtgcatttc-ttctgcaaatttaaggtaagggt 12724318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 6159457 - 6159350
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  |||| |||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  6159457 taaggtaagggtgagactcgctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 6159358  T
Q  168 tagggtta 175  Q
    ||||||||    
T  6159357 tagggtta 6159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 14442227 - 14442120
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggt-tgttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  |||||||||||| |||||||||| ||||| ||||| ||||| |||||||| |  || | | ||  |||||||||||||||||||||    
T  14442227 taaggtaagggtgggactagctttctgtaataatgggttgtatgattctaaaaagcggtttaacatgttgttgttttgttagttttgatgttatagaaat 14442128  T
Q  168 tagggtta 175  Q
    ||||||||    
T  14442127 tagggtta 14442120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 5215699 - 5215594
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagta-gttttgatgttatagaaat 167  Q
    ||||||||||||   |||||||||||||||||||| | ||||||||| || |||||||||||||||| | ||| ||| || ||||||||||| ||| |||    
T  5215699 taaggtaagggtggcactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagttattaataggttttgatgttgtag-aat 5215601  T
Q  168 tagggtt 174  Q
    |||||||    
T  5215600 tagggtt 5215594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 17669712 - 17669805
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaattagggtta 175  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||||||||||    
T  17669712 gactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaattagggtta 17669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 17684834 - 17684942
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaac--cttatggttgttagtagttttgatgttatagaa 165  Q
    |||||||||||||  |||||| ||||| |||||||||| ||||| ||||| |||| |||||||||  ||| | ||| ||  |||||||||||||||||||    
T  17684834 ttaaggtaagggtgggactagttttctgtaataatgggttgtatgattctaaaaaggggtttaacatcttgttgtt-ttgttagttttgatgttatagaa 17684932  T
Q  166 attagggtta 175  Q
    ||||||||||    
T  17684933 attagggtta 17684942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 45803345 - 45803394
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  45803345 gactagctttctctaataatgggttgtataattctgaaaaagggtttaac 45803394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 21845702 - 21845762
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagattt 180  Q
    |||||||||||| ||| | ||||||| ||||||||||||||||||||||||| || |||||    
T  21845702 aaaagggtttaagcttgtagttgttaatagttttgatgttatagaaattaggttttgattt 21845762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 31944499 - 31944432
Alignment:
Q  17 aagagcaagtagagccaagaactga---ttttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||| ||   |||||||||||| |||||||| ||||  ||||||||||||    
T  31944499 aagagcaagtagagccaagaaccgatttttttgctgtgcaattctttctgcaaatctaaggtaagggt 31944432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 17208404 - 17208338
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  17208404 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 17208338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 18718244 - 18718287
Alignment:
Q  17 aagagcaagtagagccaag-aactgattttgctgtgcatttctt 59  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  18718244 aagagcaagtagagccaaggaaccgattttgctgtgcatttctt 18718287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 24547080 - 24547014
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||  |||||| |||||||||||    
T  24547080 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttaatgtaatatttgggtatgt 24547014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 48631333 - 48631278
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 175  Q
    |||||||||||| ||| | ||||||| ||||||||||||||||||| | |||||||    
T  48631333 aaaagggtttaagcttgtagttgttaatagttttgatgttatagaagtcagggtta 48631278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 27033974 - 27034015
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctt 59  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  27033974 aagagcaagtagagccaagag-tgattttgctgtgcatttctt 27034015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 2247880 - 2247929
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||||||  ||||| |||||||||||| |||||||||||||    
T  2247880 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaac 2247929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 11964061 - 11964098
Alignment:
Q  44 ttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  11964061 ttgctgtgcatttctttctgcaaaactaaggtaagggt 11964098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 31689727 - 31689794
Alignment:
Q  17 aagagcaagtagagccaagaactga---ttttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||| ||   |||||||||||| |||||||| ||||  || |||||||||    
T  31689727 aagagcaagtagagccaagaaccgatttttttgctgtgcaattctttctgcaaatctagggtaagggt 31689794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 12155094 - 12155130
Alignment:
Q  139 gttgttagtagttttgatgttatagaaattagggtta 175  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  12155094 gttgttaatagttttgatgttatagaagttagggtta 12155130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 50350896 - 50350928
Alignment:
Q  147 tagttttgatgttatagaaattagggttagatt 179  Q
    |||||||||||||||||| ||||||||||||||    
T  50350896 tagttttgatgttatagagattagggttagatt 50350928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 3422 - 3579
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||| | ||||| |||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  3422 taaggtaagggtgggactagctttctctaataatgcgttgtatgattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 3521  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  3522 agggttatatttcattcataatcttttgtataatctctttttctacttctacccataa 3579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 25513903 - 25513746
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||| |||  ||||||||||||||||||||| | |||||||||||||||| ||||||||| || | ||||||  ||||||||||||||||||||||    
T  25513903 taaggtaatggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttgttagttttgatgttatagaaatt 25513804  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  25513803 agggttagatttcattcataatcttttgtataatctatttttctacttctacccataa 25513746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 26446255 - 26446102
Alignment:
Q  74 gtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaattaggg 172  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||||||||  ||||||| ||| | ||||||  ||||||||||||||||||||||||||    
T  26446255 gtaagggtaggactagctttctctaataatgggttgtataattctgaaaaatggtttaatcttgtagttgttgttagttttgatgttatagaaattaggg 26446156  T
Q  173 ttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  26446155 ttagatttcattcataatcttttgtataatatctttttctacttctacccataa 26446102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 14631187 - 14631062
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  14631187 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 14631088  T
Q  169 agggttagatttcattcataatcttt 194  Q
    ||||||||||||| ||||||||||||    
T  14631087 agggttagatttcgttcataatcttt 14631062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 2424387 - 2424544
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| |||||||||||  |  | ||||||||| |||||| |||||||| ||| | ||||||| ||||||||||||||||||||||    
T  2424387 taaggtaagggtgagactaactttctctaattctaagttgtataattttgaaaaagggtttaatcttgtagttgttattagttttgatgttatagaaatt 2424486  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  2424487 agggttcgatttcattcataatcttttgtataatctatttttctacttctacccataa 2424544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 37837725 - 37837789
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37837725 aagagcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 37837789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 42596424 - 42596488
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42596424 aagagcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 42596488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 33186956 - 33186850
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagta-gttttgatgttatagaaa 166  Q
    |||||||| ||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| || ||||||||||| ||| ||    
T  33186956 ttaaggtaggggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtggttgttaataggttttgatgttgtag-aa 33186858  T
Q  167 ttagggtt 174  Q
    ||||||||    
T  33186857 ttagggtt 33186850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 16296990 - 16296897
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttata 162  Q
    ||||||||||||  ||||||||||||||||||||| | |||||||||||| |||||||||||||||  | ||||||  ||||||||||||||||    
T  16296990 taaggtaagggtgggactagctttctctaataatgagttgtataattctgaaaaagggtttaacctggtagttgttgttagttttgatgttata 16296897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 41528184 - 41528245
Alignment:
Q  20 agcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  41528184 agcaagtagagccaagaactgattttgctgtgcatttctttctgcaaatctaaggtaagggt 41528245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 12424289 - 12424397
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctg---aaaagggtttaaccttatggttgttagta-gttttgatgttataga 164  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||||||||||| || | ||||||| || ||||||||||| |||     
T  12424289 ttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgttaataggttttgatgttgtag- 12424387  T
Q  165 aattagggtt 174  Q
    ||||||||||    
T  12424388 aattagggtt 12424397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 9639062 - 9638954
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||| | ||| |||||||| |||||||||||||||| | ||||||  || |||||||||| | | ||||    
T  9639062 taaggtaagggtgggactagctttctctaataatgagttgtgtaattctgaaaaagggtttaaccttgtagttgttgataattttgatgttttgggaatt 9638963  T
Q  169 agggttaga 177  Q
    ||| |||||    
T  9638962 aggtttaga 9638954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 35660994 - 35660906
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagg 171  Q
    ||||||||||||||||||||||| ||||||||| || |||| ||||||||||| | ||||||  ||||||||||||||||  |||||||    
T  35660994 gactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttgtagttgttgttagttttgatgttatatgaattagg 35660906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 15239816 - 15239927
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaacc-ttatggttgttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  |||||||||||||||||||||   ||||||| |||| |||||||||||||| |||| |||||   | ||||||| |||||||| ||    
T  15239816 taaggtaagggtgagactagctttctctaataatgaattgtataaatctgaaaaagggtttaacctttatagttgtcgttggttttgaggttatagagat 15239915  T
Q  168 tagggttagatt 179  Q
    ||||||||||||    
T  15239916 tagggttagatt 15239927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 9622541 - 9622434
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| ||| | ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  9622541 taaggtaagggtgggactagctttctctaataatgggttgtctgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 9622442  T
Q  168 tagggtta 175  Q
    ||||||||    
T  9622441 tagggtta 9622434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 23122687 - 23122623
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| |   |||||||||||||||||||||| ||||| ||||||||||||    
T  23122687 aagagcaagtagagccaaggatcaattttgctgtgcatttctttctgcaaaactaaggtaagggt 23122623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 55583248 - 55583141
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||| | ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  55583248 taaggtaagggtgggactagctttctctaataatgggttgtatgattataaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 55583149  T
Q  168 tagggtta 175  Q
    ||||||||    
T  55583148 tagggtta 55583141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 13847253 - 13847200
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa 123  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| ||||    
T  13847253 taaggtaagggtgagactagctttctctaataatgggttgtataattctaaaaa 13847200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 10273435 - 10273379
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| |||||||    
T  10273435 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggg 10273379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 15325953 - 15325914
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcattt 56  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  15325953 aagaacaagtagagccaagaactgattttgctgtgcattt 15325914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 2424559 - 2424625
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  2424559 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 2424625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 14645634 - 14645595
Alignment:
Q  301 tttgaattcattattttcatgtgttaaattcgtaattgat 340  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  14645634 tttgaattcattattttcatgtgctaaattcgtagttgat 14645595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 900587 - 900523
Alignment:
Q  17 aagagcaagtagagccaagaactgatttt-gctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||| ||||  ||||||| |||||||||||| ||||||||  |||||||||||||    
T  900587 aagagcaagtagagctaagagttgatttttgctgtgcatttc-ttctacaattttaaggtaagggt 900523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 45314124 - 45314193
Alignment:
Q  112 taattctgaaaa-gggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 179  Q
    |||||||||||| ||||||||| ||  | ||||||  |||||||||||||||||| ||||||||||||||    
T  45314124 taattctgaaaaagggtttaacatttgtagttgttgttagttttgatgttatagagattagggttagatt 45314193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 20410511 - 20410667
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg-tttaaccttatggttgttagtagttttgatgttatagaaat 167  Q
    |||||||||||||   | |||||||||||||||||||| |||||||||||||||| || ||||||||| | ||||||| |||||||||||  ||||||||    
T  20410511 ttaaggtaagggtggaaatagctttctctaataatgggttgtataattctgaaaaaggatttaaccttgtagttgttattagttttgatg--atagaaat 20410608  T
Q  168 tagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||    
T  20410609 tagggttagatctcattcataatcttttgtataatctctttttctacttctacccataa 20410667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 15998941 - 15998806
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagg-gtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| |||||||||||  |  | |||||||||||||||| | |||||||||| | ||||||  ||||||||||||||||||||||    
T  15998941 taaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaaagagtttaaccttgtagttgttgttagttttgatgttatagaaatt 15998842  T
Q  169 agggttagatttcattcataatctttcgtataatct 204  Q
    |||||||||||||||| ||||||||| |||||||||    
T  15998841 agggttagatttcattgataatcttttgtataatct 15998806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 28709672 - 28709608
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28709672 aagagcaagtagagccaagaactgattttgctgtgcatttctttctataaaattaaggtaagggt 28709608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 21683075 - 21683171
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaa 166  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||| | |||||||||||||||| | |||||| |||||||||||||||||||||    
T  21683075 taaggtaagggtgggactagctttctctaataatgggttgtataattcagaaaaagggtttaaccttgtagttgtt-gtagttttgatgttatagaaa 21683171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 21686158 - 21686218
Alignment:
Q  166 attagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  21686158 attagggttagatttcattcataatcttttgtataatctctttttctacttctacccataa 21686218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 19587678 - 19587742
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  19587678 aagaacaagtagagccaagaactgattttgttgtgcatttctttctgcaaaactaaggtaagggt 19587742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 19825486 - 19825576
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgtt 159  Q
    ||||||||||||  ||||||||||||||||||||||| || ||||||||| |||||| ||||||||| | ||||||  |||||||||||||    
T  19825486 taaggtaagggtgagactagctttctctaataatgggttgcataattctgaaaaaggttttaaccttgtagttgttgttagttttgatgtt 19825576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 23658141 - 23658044
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagta-gttttgatgttatagaa 165  Q
    ||||||||||||  ||||||||||| |||||||| || |||||||||||| |||||||||||||||| | ||||||| || ||||||||||| |||||    
T  23658141 taaggtaagggtgggactagctttccctaataataggttgtataattctgaaaaagggtttaaccttgtagttgttaataggttttgatgttgtagaa 23658044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 2709437 - 2709373
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||| ||||  ||||||||||||    
T  2709437 aagagcaagtagagccaagaaccgattttgttgtgcatttctttctgcaaatctaaggtaagggt 2709373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 18982604 - 18982515
Alignment:
Q  90 ctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatg-ttatagaaattagggttaga 177  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||| | ||||||  ||| ||||||| ||| ||||||||||||||||    
T  18982604 ctttatctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgctaggtttgatgattagagaaattagggttaga 18982515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 10446269 - 10446162
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||| ||||||||||||||    
T  10446269 taaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagtttcgatgttatagaaat 10446170  T
Q  168 tagggtta 175  Q
    ||||||||    
T  10446169 tagggtta 10446162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 1818954 - 1818899
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggtta 175  Q
    |||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||    
T  1818954 aaaagggtttaagcttgtagttgttaatagttttgatgttatagaaattagggtta 1818899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 29045323 - 29045260
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  29045323 taaggtaagggtgagactagctttctctaataatgggttgtataattttgaaaaagggtttaac 29045260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 26417759 - 26417823
Alignment:
Q  17 aagagcaagtagagccaagaactga-ttttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||||||||||||||    
T  26417759 aagagcaagtagagccaagaattgatttttgttgtgca-ttctttctgcaaaattaaggtaagggt 26417823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 14995190 - 14995252
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||  |||||| |||||||||||||||| | ||||||||||||||||    
T  14995190 aagagcaagtagagccaagaatcgatttt-ctgtgcatttctttctgc-aaattaaggtaagggt 14995252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 12446308 - 12446371
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||  |||| ||||||||||||||||||| |||   ||||||||||||    
T  12446308 aagagcaagtagagccaagag-tgatattgctgtgcatttctttctgcaattctaaggtaagggt 12446371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 20410682 - 20410748
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  20410682 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 20410748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 14615397 - 14615443
Alignment:
Q  35 gaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||| ||||||||||||||||||||||| ||||  ||||||||||||    
T  14615397 gaaccgattttgctgtgcatttctttctgcaaatctaaggtaagggt 14615443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 29926738 - 29926696
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctt 59  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
T  29926738 aagagcaagtagagccaagaaccatttttgctgtgcatttctt 29926696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19819956 - 19819892
Alignment:
Q  17 aagagcaagtagagccaag-aactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| ||| ||||| |||||||| || ||||| ||||| ||||||||||||    
T  19819956 aagagcaagtagagccaaggaaccgattt-gctgtgcaattttttctgcaaaactaaggtaagggt 19819892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 25601371 - 25601437
Alignment:
Q  112 taattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatt 179  Q
    |||||||||||| ||||||||||||   || |||  ||||||| |||||||||||||||||||||||||    
T  25601371 taattctgaaaaagggtttaaccttt--gtagttgttagttttcatgttatagaaattagggttagatt 25601437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 1593816 - 1593752
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||| ||||| |    |||||||||||||||| |||| ||||| ||||||||||||    
T  1593816 aagagcaagtagaaccaaggatcatttttgctgtgcatttccttctgcaaaactaaggtaagggt 1593752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 21723848 - 21723912
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||| ||||| |    |||||||||||||||| |||| ||||| ||||||||||||    
T  21723848 aagagcaagtagaaccaaggatcatttttgctgtgcatttccttctgcaaaactaaggtaagggt 21723912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 34140456 - 34140554
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaag-ggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||| ||||||||||||| | ||||||| |||||   ||||||| ||| | ||||||  ||||||||||||||||| ||||    
T  34140456 taaggtaagggtgggactagctt-ctctaataatgggtt-tataattttgaaatctggtttaatcttgtagttgttgttagttttgatgttataggaatt 34140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 17521 - 17678
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  |||||||||| |||||||||||  |||||||||||||||| |||||||||||| | ||||||  |||||||| |||||||||||||    
T  17521 taaggtaagggtcggactagctttttctaataatggattgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgctgttatagaaatt 17620  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||| |||||||||||||||||| ||| |||| |||||||| |||||||||||||    
T  17621 agggttatatttcattcataatcttttgtacaatcactttttctacttctacccataa 17678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 17693 - 17731
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgct 264  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  17693 aaagtgattattgtggatttaattggtcaaatttgtgct 17731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 23933 - 24039
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggttagatttcattcataatctttcgtataatctctttttcttcttcta 219  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  23933 aaaagggtttaaccttgtagttgttattagttttgatgttatagaaattagggttagatttcattcataatcttttgtataatctctttttctacttcta 24032  T
Q  220 cccataa 226  Q
    |||||||    
T  24033 cccataa 24039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 24054 - 24120
Alignment:
Q  226 aaagtgattattgtggatttaattggtttaatttgtgctctatttgttgctgtaatttttgggtatgt 293  Q
    |||||||||||||||||||||||||||  |||||||||| ||| | ||| || ||| |||||||||||    
T  24054 aaagtgattattgtggatttaattggtgaaatttgtgct-tatgttttgatgcaatgtttgggtatgt 24120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 2072 - 1947
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  2072 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 1973  T
Q  169 agggttagatttcattcataatcttt 194  Q
    ||||||||||||| ||||||||||||    
T  1972 agggttagatttcgttcataatcttt 1947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 15616 - 15772
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| ||| ||||||||||||  ||||| ||||| |||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  15616 taaggtaagggtgggactaactt-ctctaataatggtttgtatgattctaaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 15714  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  15715 agggttagatttcattcataatcttttgtataatctctttttctacttctacacataa 15772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 186196 - 186321
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||  ||||||||||||||||||||||    
T  186196 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagttttgatgttatagaaatt 186295  T
Q  169 agggttagatttcattcataatcttt 194  Q
    ||||||||||||| ||||||||||||    
T  186296 agggttagatttcgttcataatcttt 186321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 171657 - 171696
Alignment:
Q  301 tttgaattcattattttcatgtgttaaattcgtaattgat 340  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  171657 tttgaattcattattttcatgtgctaaattcgtagttgat 171696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 266174 - 266111
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| | |  |||||||||||||||  |||| ||||| ||||||||||||    
T  266174 aagagcaagtagagccaagga-tctttttgctgtgcattttcttctgcaaaactaaggtaagggt 266111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 11159 - 11318
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttag--tagttttgatgttatagaaa 166  Q
    ||||||||||| |  ||||||||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||||    |||||||||||||||| |||    
T  11159 ttaaggtaaggatgggactagctttctctaataatgggttgtatgattctaaaaaggggtttatcatgttgttgttttgttagttttgatgttatataaa 11258  T
Q  167 ttagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11259 ttagggttagatttcattcataatcttttgtataatctctttttcttcttctacccataa 11318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 17940 - 18097
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg-tttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| |||||||||||  |  | |||||||||||||||| || ||||||||| | ||||||  ||||||||||||||||||||||    
T  17940 taaggtaagggtgggactaactttctctaattctaagttgtataattctgaaaaaggatttaaccttgtagttgttgttagttttgatgttatagaaatt 18039  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||| ||| || |||||||||||| | |||||||||||||    
T  18040 agggttagatttcattcataatattttgtttaatctctttttttacttctacccataa 18097  T

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Target: scaffold0032 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 61848 - 62008
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttagtagttttgatgttata----gaa 165  Q
    ||||||||||||  ||||| |||||||||||  |  | |||||||||||||||||| ||||||||| | ||||||  ||||||||||||||||    |||    
T  61848 taaggtaagggtgagactaactttctctaattctaagttgtataattctgaaaaggatttaaccttgtagttgttgttagttttgatgttatatatagaa 61947  T
Q  166 attagggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||    
T  61948 attagggttagatttcattcataatcttttgtttaatctctttttctacttctacctataa 62008  T

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Target: scaffold0516 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 5305 - 5462
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||| |||||||||||  |  | ||||||||||| |||| |||||||||||| | ||||||  | |||||||||||||||| |||    
T  5305 taaggtaagggtgggactaactttctctaattttaagttgtataattcttaaaaagggtttaaccttgtagttgttgttcgttttgatgttatagatatt 5404  T
Q  169 agggttagatttcattcataatctttcgtataatctctttttcttcttctacccataa 226  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||    
T  5405 agggttagatttcattcataatcttttgtataatctccttttctacttcaacccataa 5462  T

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Target: scaffold1128 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 602 - 538
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  602 aagagcaagtagagccaagaactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0679 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 1531 - 1595
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1531 aagagcaagtagagccaagaactgattttgctgtgcatttctttctataaaattaaggtaagggt 1595  T

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Target: scaffold0676 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 2933 - 2831
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||  |||||| |||||||||| ||||    
T  2933 taaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttagtttcgatgttataggaatt 2834  T
Q  169 agg 171  Q
    |||    
T  2833 agg 2831  T

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Target: scaffold0815 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 1557 - 1493
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  1557 aagagcaagtagagccaataactgattttgctgtgcatttctttctgcaaaattaaggtaagggt 1493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 1128 - 1022
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||  |||||||||||| |||||||||||||||| | | ||||  ||||||||||||| ||||||||    
T  1128 taaggtaagggtgagactagctttctctaataatggattgtataattctgaaaaagggtttaaccttgtagatgttgttagttttgatgttttagaaatt 1029  T
Q  169 agggtta 175  Q
    | |||||    
T  1028 atggtta 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 4988 - 4878
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaacc-ttatggttgttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  |||||||||||||||||||| || |||||||||||| |||||||||||||| || | ||||||  |||||||||||||||||  ||    
T  4988 taaggtaagggtgggactagctttctctaataat-ggttgtataattctgtaaaagggtttaacctttgtagttgttgttagttttgatgttatagtgat 4890  T
Q  168 tagggttagatt 179  Q
    ||||||||||||    
T  4889 tagggttagatt 4878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 70 - 177
Target Start/End: Complemental strand, 14001 - 13893
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||  ||||||||||||||||||||||| |||| ||||||| ||||||||||||||||   ||||||  ||||||||||||| | | ||||    
T  14001 taaggtaagggtgggactagctttctctaataatgggttgtaaaattctgaaaaagggtttaaccttgaagttgttgttagttttgatgttttgggaatt 13902  T
Q  169 agggttaga 177  Q
    ||| |||||    
T  13901 aggtttaga 13893  T

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Target: scaffold0097 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 28924 - 28864
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaa 77  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28924 aagaacaagtagagccaagaactgattttgctgtgcatttctttctgcaaaactaaggtaa 28864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 56935 - 56871
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||    
T  56935 aagagcaagtagagccaagaaccgattttgctgtgcatttctttctgcaaatctaaggtaagggt 56871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 5686 - 5578
Alignment:
Q  69 ttaaggtaagggtttgactagctttctctaataatgggctgtataattctg---aaaagggtttaaccttatggttgttagta-gttttgatgttataga 164  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||   ||||||||||||| || | ||||||| || ||||||||||| |||     
T  5686 ttaaggtaagggtgggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgttaataggttttgatgttgtag- 5588  T
Q  165 aattagggtt 174  Q
    ||||||||||    
T  5587 aattagggtt 5578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 14586 - 14689
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatg-ttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||  || | ||||||  ||||||||||| ||| ||||||    
T  14586 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttgttagttttgatgattagagaaat 14685  T
Q  168 tagg 171  Q
    ||||    
T  14686 tagg 14689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 23644 - 23747
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatg-ttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||  || | ||||||  ||||||||||| ||| ||||||    
T  23644 taaggtaagggtgagactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttgttagttttgatgattagagaaat 23743  T
Q  168 tagg 171  Q
    ||||    
T  23744 tagg 23747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 10999 - 10893
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggt-tgttagtagttttgatgttatagaaatt 168  Q
    ||||||||||||   |||||||||||||||||||||| ||||| ||||| ||||||||||||| |  || | | ||  ||||||||||||||||||||||    
T  10999 taaggtaagggtggaactagctttctctaataatgggttgtatgattctaaaaagggtttaacatgttgttgttttgttagttttgatgttatagaaatt 10900  T
Q  169 agggtta 175  Q
    |||||||    
T  10899 agggtta 10893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 19255 - 19154
Alignment:
Q  74 gtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattaggg 172  Q
    ||||||||  ||||| |||||||||||  |  | |||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||| ||||    
T  19255 gtaagggtgggactaactttctctaattctaagttgtataattctgaaaaagggtttaaccttgtagttgttattagttttgatgttatagaaataaggg 19156  T
Q  173 tt 174  Q
    ||    
T  19155 tt 19154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 19160 - 19115
Alignment:
Q  122 aagggtttaaccttatggttgttagtagttttgatgttatagaaat 167  Q
    |||||||||||||| | ||||||  |||||||||||||||||||||    
T  19160 aagggtttaaccttgtagttgttgatagttttgatgttatagaaat 19115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 16419 - 16528
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaaccttatggttgttagtagttttgatg-ttatagaaat 167  Q
    ||||||||||||  || || |||| |||||||||||| |||||||||||| |||||||||||||||| | ||||||  ||| ||||||| ||| ||||||    
T  16419 taaggtaagggtgagattaactttatctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttgttaggtttgatgattagagaaat 16518  T
Q  168 tagggttaga 177  Q
    ||||||||||    
T  16519 tagggttaga 16528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 8746 - 8853
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||| ||||||||||||| ||||| ||||| ||||||| || | | ||| ||||  ||  |||||||||||||||||||||    
T  8746 taaggtaagggtgagactagcttactctaataatgggttgtatgattctaaaaaggggttgaacctattgttgttttgttagttttgatgttatagaaat 8845  T
Q  168 tagggtta 175  Q
    ||||||||    
T  8846 tagggtta 8853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 10795 - 10732
Alignment:
Q  18 agagcaagtagagccaagaactga-ttttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||    
T  10795 agagcaagtagagccaagaactgatttttgctgtgcatttc-ttctgcaaacttaaggtaagggt 10732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 19908 - 19801
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  |||||| |||||||||||||||| ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||||||    
T  19908 taaggtaagggtaggactagatttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 19809  T
Q  168 tagggtta 175  Q
    ||||||||    
T  19808 tagggtta 19801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 5506 - 5453
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa 123  Q
    ||||||||||||  ||||| ||||||||||||||| | ||||||||||||||||    
T  5506 taaggtaagggtgggactacctttctctaataatgagttgtataattctgaaaa 5453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 322145 - 322081
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| | ||  ||||||||||||    
T  322145 aagagcaagtagagccaagaaccaattttgctgtgcatttctttctgctaatctaaggtaagggt 322081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 66072 - 66135
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||  |||||| ||||| |||||||||| |||||||||||| |||||||||||||    
T  66072 taaggtaagggtgggactagatttctttaataatgggttgtataattctgaaaaagggtttaac 66135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 75989 - 75885
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||| ||||||||| ||||| ||||| ||||||| || | | | | ||||  ||| ||||||||||||||||  |||    
T  75989 taaggtaagggtgggactagctttctccaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttattagttttgatgttataagaat 75890  T
Q  168 taggg 172  Q
    |||||    
T  75889 taggg 75885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 327833 - 327788
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttct 62  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||    
T  327833 aagagcaagtagagccaataaccaattttgctgtgcatttctttct 327788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 111412 - 111356
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||||||||||  | ||||||||||||||||||||| ||||| ||||| |||||||    
T  111412 taaggtaagggtggggctagctttctctaataatgggttgtatgattctaaaaaggg 111356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 73139 - 73083
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||||||||||  ||||| ||||||||||||||| | ||||| ||||| |||||||    
T  73139 taaggtaagggtgggactaactttctctaataatgagttgtatgattctaaaaaggg 73083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0706 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0706
Description:

Target: scaffold0706; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2470 - 2525
Alignment:
Q  27 agagccaag-aactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  2470 agagccaaggaaccgattttgctgtgcatttctttctacaaaactaaggtaagggt 2525  T

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Target: scaffold0594 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 2299 - 2236
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||  |||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  2299 taaggtaagggtgggactagctttctataataatgggttgtataattctgaaaaagggtttaac 2236  T

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Target: scaffold0017 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 179
Target Start/End: Complemental strand, 26776 - 26669
Alignment:
Q  73 ggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagg 171  Q
    |||||||||  || || |||||||||||  | || |||||||||||||||| ||||||||| || | ||||||  ||| |||||||||||||| ||||||    
T  26776 ggtaagggtgggattaactttctctaattttaggttgtataattctgaaaaagggtttaactttgtagttgttgttagctttgatgttatagagattagg 26677  T
Q  172 gttagatt 179  Q
    ||||||||    
T  26676 gttagatt 26669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 177
Target Start/End: Original strand, 18640 - 18749
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgt-ataattctg-aaaagggtttaaccttatggttgttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||| | ||| |||||| || |||| ||||||||||| | ||||||  ||||||||||||| | | |||    
T  18640 taaggtaagggtgggactagctttctctaataatgagttgtaataattttgaaaaaaggtttaaccttgtagttgttgttagttttgatgttttgggaat 18739  T
Q  168 tagggttaga 177  Q
    |||| |||||    
T  18740 taggtttaga 18749  T

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Target: scaffold0139 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 23586 - 23525
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaa 131  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||| ||| ||||||| ||||    
T  23586 taaggtaagggtaggactagctttctctaataatgggttgtataaatctaaaaaggggttaa 23525  T

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Target: scaffold0139; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 40214 - 40268
Alignment:
Q  120 aaaagggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 174  Q
    |||||||||||||| | | ||||||  ||||||||||||||||||| ||||||||    
T  40214 aaaagggtttaaccatgtagttgttgatagttttgatgttatagaagttagggtt 40268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 564 - 500
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||| |||   ||||||||||||    
T  564 aagagcaagtagtgccaagaactgaaattgctgtgcatttctttctgcaattctaaggtaagggt 500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 40159 - 40052
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttgttag--tagttttgatgttatagaaat 167  Q
    |||||||||| |  ||||| ||||||||||||||||| ||||| ||||| ||||||| || | | | | ||||||    |||||||||||||||||||||    
T  40159 taaggtaaggatgcgactaactttctctaataatgggttgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagaaat 40060  T
Q  168 tagggtta 175  Q
    ||||||||    
T  40059 tagggtta 40052  T

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Target: scaffold0031 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 127343 - 127450
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaagggtttaaccttatggttg--ttagtagttttgatgttatagaaat 167  Q
    ||||||||||||  ||||||||||||||||||||||  ||||| ||||| ||||||| || | | | | ||||  ||  |||||||||||||||||| ||    
T  127343 taaggtaagggtgggactagctttctctaataatggattgtatgattctaaaaaggggtttaacatgttgttgttttgttagttttgatgttatagagat 127442  T
Q  168 tagggtta 175  Q
    ||||||||    
T  127443 tagggtta 127450  T

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Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 171
Target Start/End: Original strand, 38442 - 38543
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaatt 168  Q
    |||||||||||| |||||| | |||| |||| ||| | | |||||||||||||| ||||||||  || | ||||||| ||||||||||||||||||| ||    
T  38442 taaggtaagggtgtgactaaccttctttaatcatgag-tatataattctgaaaaagggtttaattttgtagttgttaatagttttgatgttatagaagtt 38540  T
Q  169 agg 171  Q
    |||    
T  38541 agg 38543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 248053 - 248011
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctt 59  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  248053 aagagcaagtagagccaagatttgattttgctgtgcatttctt 248011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 254565 - 254502
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||||  |||||||| |||||||||| |||| |||  |||||||||||||    
T  254565 aagagcaagtagagccaagatttgattttggtgtgcatttc-ttctgcaattttaaggtaagggt 254502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 1313 - 1264
Alignment:
Q  125 ggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 174  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||    
T  1313 ggtttaaccttatagttgttgatagttttgatgttatagaaataagggtt 1264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 6819 - 6770
Alignment:
Q  125 ggtttaaccttatggttgttagtagttttgatgttatagaaattagggtt 174  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| ||||||    
T  6819 ggtttaaccttatagttgttgatagttttgatgttatagaaataagggtt 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 6470 - 6417
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaa 123  Q
    ||||||||||||  ||||||||||||||||||||| | ||| ||||||||||||    
T  6470 taaggtaagggtaagactagctttctctaataatgagttgtgtaattctgaaaa 6417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 152447 - 152484
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcat 54  Q
    |||| |||||||||||||||||||||||||||||||||    
T  152447 aagaacaagtagagccaagaactgattttgctgtgcat 152484  T

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Target: scaffold0239 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 6304 - 6367
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| | | ||||||||||| ||||| |||| ||||| ||||||||||||    
T  6304 aagagcaagtagagccaagga-tcattttgctgtgtatttccttctgcaaaactaaggtaagggt 6367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13587 - 13650
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| | | ||||||||||| ||||| |||| ||||| ||||||||||||    
T  13587 aagagcaagtagagccaagga-tcattttgctgtgtatttccttctgcaaaactaaggtaagggt 13650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 28564 - 28493
Alignment:
Q  110 tataattctgaaaa-gggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 179  Q
    |||||||||||||| ||||||||||||  | ||||||  ||||||| |||||||||| ||||||||||||||    
T  28564 tataattctgaaaaagggtttaacctttgtagttgttgttagtttttatgttatagagattagggttagatt 28493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 35186 - 35249
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattct-gaaaagggtttaac 132  Q
    ||||||||||||   |||||||||| ||||||||||| |||||||||||  |||||||||||||    
T  35186 taaggtaagggtggtactagctttccctaataatgggttgtataattctaaaaaagggtttaac 35249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0730 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0730
Description:

Target: scaffold0730; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 6519 - 6561
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||    
T  6519 gactacctttctctaataatgggttgtatgattctgaaaaggg 6561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 59695 - 59757
Alignment:
Q  110 tataattctgaaaa-gggtttaaccttatggttgttagtagttttgatgttatagaaattagg 171  Q
    |||||||||||||| ||||||||| || | ||||||  |||||||||| ||||||||||||||    
T  59695 tataattctgaaaaagggtttaactttgtagttgttgatagttttgatattatagaaattagg 59757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 423 - 374
Alignment:
Q  84 gactagctttctctaataatgggctgtataattctg-aaaagggtttaac 132  Q
    ||||||||||||||||  ||||| |||||||||||| |||||||||||||    
T  423 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaac 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 67298 - 67233
Alignment:
Q  17 aagagcaagtagagccaagaactgatttt-gctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||| ||||||||||||| || |||||| |||||||| |||||||| ||||  ||||||||||||    
T  67298 aagaggaagtagagccaaggaccgatttttgctgtgcaattctttctgcaaatctaaggtaagggt 67233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 371466 - 371403
Alignment:
Q  17 aagagcaagtagagccaa-gaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    |||||||||||||||||| |||| || |||||||||||||| ||||| ||||| ||||||||||||    
T  371466 aagagcaagtagagccaaggaaccga-tttgctgtgcattt-tttctgcaaaactaaggtaagggt 371403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 110 - 74
Alignment:
Q  139 gttgttagtagttttgatgttatagaaattagggtta 175  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  110 gttgttaatagttttgatgttatagaagttagggtta 74  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13663 - 13726
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| | |  |||||||||||||||| || | ||||| ||||||||||||    
T  13663 aagagcaagtagagccaagga-tctttttgctgtgcatttccttttgcaaaactaaggtaagggt 13726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 6461 - 6529
Alignment:
Q  112 taattctgaaaagggtttaacctta-tggttgttagtagttttgatgttatagaaattagggttagatt 179  Q
    ||||||| ||||||||||||||||  | ||||||  |||||||||||||||||| |||| || ||||||    
T  6461 taattctaaaaagggtttaacctttgtagttgttgttagttttgatgttatagagattatggctagatt 6529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 7672 - 7608
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttctttctacaaaattaaggtaagggt 81  Q
    ||||||||||||||||||| | | |  ||||||||||||| ||||| ||||| || |||||||||    
T  7672 aagagcaagtagagccaaggaatcaaattgctgtgcatttttttctgcaaaactacggtaagggt 7608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 19238 - 19277
Alignment:
Q  17 aagagcaagtagagccaagaactgattttgctgtgcatttc 57  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  19238 aagagcaagtagagccaagaac-cattttgctgtgcatttc 19277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 8896 - 8840
Alignment:
Q  70 taaggtaagggtttgactagctttctctaataatgggctgtataattctgaaaaggg 126  Q
    |||| |||||||  |||||||||| |||||||||||  ||||| |||||||||||||    
T  8896 taagttaagggtgggactagctttatctaataatggattgtatgattctgaaaaggg 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 50810 - 50838
Alignment:
Q  28 gagccaagaactgattttgctgtgcattt 56  Q
    |||||||||||||||||||||||||||||    
T  50810 gagccaagaactgattttgctgtgcattt 50838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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