View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3550_low_9 (Length: 552)
Name: NF3550_low_9
Description: NF3550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3550_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 536
Target Start/End: Complemental strand, 17408061 - 17407541
Alignment:
| Q |
16 |
atcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatattcaacttcaacaactttatca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17408061 |
atcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatactcaacttcaacaactttatca |
17407962 |
T |
|
| Q |
116 |
ctttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407961 |
ctttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttggtgttatgttaaagtttt |
17407862 |
T |
|
| Q |
216 |
tcgcatatgattcgaggtaacttatgaactgaaatttcgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407861 |
tcgcatatgattcgaggtaacttatgaactgaaattttgaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagg |
17407762 |
T |
|
| Q |
316 |
gaggtgaagtttaagacgatcgtaggttcgattctgccaaagcgaagcaatgcagttagctcgttcgaggacgacaaaaggaacattttggtccttaaga |
415 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | | |
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| T |
17407761 |
aagatgaagtttaagacgatcgtaggttcgattctgccaaagcgaggcaatgcagttagctcgttcgaggacgacaaaaggaacattttggtctttcaaa |
17407662 |
T |
|
| Q |
416 |
caagctgcaactgctaagcctgatggaccagctccaactataacaggtccattcactaatatgcaacggtttttgagaatgtcttcggggtcgaatgttt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407661 |
caagctgcaactgctaagcctgatggaccagctccaactataacaggtccattcactaatatgcaacggtttttgagaatgtcttcggggtcgaatgttt |
17407562 |
T |
|
| Q |
516 |
gagacattggtggcatgttta |
536 |
Q |
| |
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||||||||||||||||||||| |
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| T |
17407561 |
gagacattggtggcatgttta |
17407541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 29857847 - 29857896
Alignment:
| Q |
278 |
gggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
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||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
29857847 |
gggaatggaaagttaggtagttgacagaattgtttagggaggtgaagttt |
29857896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
| Q |
59 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
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||||| ||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29857640 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
29857684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
| Q |
56 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39733577 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39733624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
| Q |
56 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
103 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39839381 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39839334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 39839207 - 39839134
Alignment:
| Q |
254 |
gaagggtattcagggaagtgatcagggaatggaaaattgggtagttgacacaattgtttagggaggtgaagttt |
327 |
Q |
| |
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||||||||||||||||| | ||||| | ||||| || ||||||||||| |||||||| || ||||||||||| |
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| T |
39839207 |
gaagggtattcagggaaatcttcaggcattggaaggttaggtagttgacagaattgttttggaaggtgaagttt |
39839134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 467
Target Start/End: Complemental strand, 32789609 - 32789552
Alignment:
| Q |
410 |
ttaagacaagctgcaactgctaagcctgatggaccagctccaactataacaggtccat |
467 |
Q |
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|||||||| ||||| ||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
32789609 |
ttaagacatgctgctgctgctaatcctgagggaccagctccaactataattggtccat |
32789552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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