View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3551_high_2 (Length: 291)
Name: NF3551_high_2
Description: NF3551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3551_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 43831685 - 43831968
Alignment:
| Q |
1 |
atgtaggaaagcacttcaaagttcaaatgctactcatatcctcttcatagagtaattagtgctaatccaataatttagtgtcaggttttttaggttggaa |
100 |
Q |
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| T |
43831685 |
atgtaggaaagcacttcaaagttcaaatgctactcatatcctcttcatagagtaattagtgctaatccaataatttagtgtcaggttttttaggttgaaa |
43831784 |
T |
|
| Q |
101 |
atattagacatctgctgttttgctatcacttgttcagtcttggtcgtacaagtagcatgcacatttttagagtgattgtgtattttgcatttcatgtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43831785 |
atattagacatctgctgttttgctatcacttgttcagtcttggtcgtacaagtagcatgcacatttttagagtgattgtgtattttgcatttcatgtatt |
43831884 |
T |
|
| Q |
201 |
cttgtggctcacagccaaatagcagattgaccaatgcactttaagcacatttcaacgagcttaaatcggtttatcctatacttt |
284 |
Q |
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| T |
43831885 |
cttgtggctcacagccaaatagcagattgaccaatgcactttaagcacatttcaaagagcttaaatcggtttatcctatacttt |
43831968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 43826603 - 43826712
Alignment:
| Q |
109 |
catctgctgttttgctatcacttgttcagtcttggtcgtacaagtagcatgcacatttttagagtgattgtgtattttgcatttcatgtattcttgtggc |
208 |
Q |
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|||||| | |||||||| ||| | || |||||||||||||||||||| || || |||||||||||| ||| ||||| ||||||| ||||||| |||| |
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| T |
43826603 |
catctgttattttgctagcacgttttaagtcttggtcgtacaagtagtatacatatttttagagtgcagctgttttttg-atttcatatattcttatggc |
43826701 |
T |
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| Q |
209 |
tcacagccaaa |
219 |
Q |
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|||||||||| |
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| T |
43826702 |
ccacagccaaa |
43826712 |
T |
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