View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3551_high_3 (Length: 263)
Name: NF3551_high_3
Description: NF3551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3551_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 49738339 - 49738587
Alignment:
| Q |
1 |
aagaggaagagaagatagaaggacaaggcttagaagccaacccttgatgaatgcaacaactaaacctcctaaaaaagatgacacatactgtatgaatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738339 |
aagaggaagagaagatagaaggacaaggcttagaagccaacccttgatgaatgcaacaactaaacctcctaaaaaagatgacacatactgtatgaatttt |
49738438 |
T |
|
| Q |
101 |
cctacctgagaagatatcacccaaaaaaggaagaataagctattatccttaaatcttgttatcatagttagatcaaatgattatgcattaatagaaatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738439 |
cctacctgagaagatatcacccaaaaaaggaagaataagctattatccttaaaacttgttatcatagttagatcaaatgattatgcattaatagaaatac |
49738538 |
T |
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| Q |
201 |
cttctctcccatggcatcttgaataagaactgtgtcacctgatattctt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49738539 |
cttctctcccatggcatcttgaataagaactgtgtcacctgatattctt |
49738587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 36284848 - 36284808
Alignment:
| Q |
198 |
taccttctctcccatggcatcttgaataagaactgtgtcac |
238 |
Q |
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| T |
36284848 |
taccttctcacccattgcatcttgaataagaattgtgtcac |
36284808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 51211833 - 51211587
Alignment:
| Q |
1 |
aagaggaagagaagatagaaggacaaggcttagaagccaacccttgatgaatgcaacaactaaacctcctaaaaaagatgacacatactgtatgaatttt |
100 |
Q |
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|||||||| ||| ||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
51211833 |
aagaggaatagacgatagaaggacaagggttaaaagccaacccaagatgaatgccacaactaaacctcctaaaaaacatgacacatattgtatgaatttt |
51211734 |
T |
|
| Q |
101 |
cctacctg-agaagatatcacccaaaaaaggaagaataag---ctattatccttaaatcttgttatcatagttagatcaaatgattatgcattaatagaa |
196 |
Q |
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|||||||| |||| ||||| |||||||||||||||| || ||||||| | ||| |||||||||| ||||||||||||||| |||||| |
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| T |
51211733 |
cctacctgcagaacatatccaccaaaaaaggaagaatgagttattattatcttcgaattttgttatcatggttagatcaaatgatgctgcatt------c |
51211640 |
T |
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| Q |
197 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattctt |
249 |
Q |
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||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| |
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|
| T |
51211639 |
ataccttgtctcccatggcttcttgaataagaactgtatcacctgacattctt |
51211587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 51198114 - 51198061
Alignment:
| Q |
196 |
aataccttctctcccatggcatcttgaataagaactgtgtcacctgatattctt |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||| || |||||| |
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|
| T |
51198114 |
aataccttctcacccatggcatcttgaataagaacagtatcaccagacattctt |
51198061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 29938485 - 29938529
Alignment:
| Q |
197 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctg |
241 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||| |||||||||| |
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|
| T |
29938485 |
ataccttctcccccatggcatctttaataagaacagtgtcacctg |
29938529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 51144458 - 51144406
Alignment:
| Q |
197 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattctt |
249 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||||| || |||||||| |||||| |
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|
| T |
51144458 |
ataccttctcacccatggcatccttaataagaacagtatcacctgacattctt |
51144406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 38568482 - 38568533
Alignment:
| Q |
197 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattct |
248 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || |||||||| ||||| |
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|
| T |
38568482 |
ataccttctcacccatggcatcttgaataagaacagtatcacctgacattct |
38568533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 38527181 - 38527233
Alignment:
| Q |
197 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattctt |
249 |
Q |
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|||||||||| ||||||||||||||||||||||| || ||||| || |||||| |
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| T |
38527181 |
ataccttctcacccatggcatcttgaataagaacagtatcaccagacattctt |
38527233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 5764298 - 5764247
Alignment:
| Q |
197 |
ataccttctctcccatggcatcttgaataagaactgtgtcacctgatattct |
248 |
Q |
| |
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||||||| |||||||||||||||||||| |||| ||||||||| || ||||| |
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| T |
5764298 |
ataccttttctcccatggcatcttgaatgagaattgtgtcaccagacattct |
5764247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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