View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_high_10 (Length: 335)
Name: NF3552_high_10
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 4709827 - 4710117
Alignment:
| Q |
1 |
ggcgttacttacaattacaaaaatgacctgaaagacagcacatgttttatatcttccccaataagagtcacttaggaaagctcccactagagagaagatg |
100 |
Q |
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| T |
4709827 |
ggcgttacttacaattacaaaaatgacctgaaagacagcacatgttttatatcttccccaataagagtcacttaggaaagctcccactagagagaagatg |
4709926 |
T |
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| Q |
101 |
taaacagttccagtccatttgctcacgttgttggcggcttccgcgttattttgtcctaccacccttgtcaggaataccactaggttcactccaatcccaa |
200 |
Q |
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| T |
4709927 |
taaacagttccagtccatttgctcacgttgttggcggcttctgcattattttgtcctaccacccttgtcaggaataccactaggttcactccaatcccaa |
4710026 |
T |
|
| Q |
201 |
agaatgccagagttgccagacattggttcactgatccatacaatcagaattacaaaataatcagcattagcagccaccgttttgttatgtg |
291 |
Q |
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| T |
4710027 |
agaatgccagagttgccagacattggttcactgatccatacaatcagaattacaaaataatcagcattagcagccaccgttttgttatgtg |
4710117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 40742522 - 40742294
Alignment:
| Q |
5 |
ttacttacaattacaaaaatgacctgaaagacagcacatgttttatatcttccccaataagagtcacttaggaaagctcccactagagagaagatgtaaa |
104 |
Q |
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|||||||| ||||||||||| | ||||||| |||||||||||| ||||||||||||||||| ||||| |||||||| || || |||||||||||||||| |
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| T |
40742522 |
ttacttacggttacaaaaatgccttgaaagatagcacatgttttgtatcttccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaa |
40742423 |
T |
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| Q |
105 |
cagttccagtccatttgctcacgttgttggcggcttccgcgttattttgtcctaccacccttgtcaggaataccactaggttcactccaatcccaaagaa |
204 |
Q |
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| T |
40742422 |
ctgtgccagtccacttgctgacattgttagcagcagcagcattatcttgacccaacacccttgtcaagaacagaactaggttcactccaactccaaagaa |
40742323 |
T |
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| Q |
205 |
tgccagagttgccagacattggttcactg |
233 |
Q |
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||| | ||||| |||| ||||||||||| |
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| T |
40742322 |
tgctaaggttgctagaccttggttcactg |
40742294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 2743576 - 2743494
Alignment:
| Q |
50 |
tatcttccccaataagagtcacttaggaaagctcccactagagagaagatgtaaacagttccagtccatttgctcacgttgtt |
132 |
Q |
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| T |
2743576 |
tatcttccccagtaagagtcactgaggaaagctccaagaagagaaaagatgtaaactgtccctgtccacttgctcacattgtt |
2743494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 3804575 - 3804657
Alignment:
| Q |
50 |
tatcttccccaataagagtcacttaggaaagctcccactagagagaagatgtaaacagttccagtccatttgctcacgttgtt |
132 |
Q |
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| T |
3804575 |
tatcttccccaataagaatcactaaggaatgctcccaagagtgaaaaaatgtaaacagttccagtccacttgctgacattgtt |
3804657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 396157 - 396068
Alignment:
| Q |
28 |
ctgaaagacagcacatgttttatatcttccccaataagagtcacttaggaaagctcccactagagagaagatgtaaacagttccagtcca |
117 |
Q |
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| T |
396157 |
ctgaaagatagcgcatgttaagtatcttccccaataagaatcactaaggaatgctcccaagagtgaaaatatgtaaacagttccagtcca |
396068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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