View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_high_13 (Length: 289)
Name: NF3552_high_13
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 37387091 - 37386826
Alignment:
| Q |
6 |
agcagcacagacaagacttttaggaaacttatcaagtcctttaagannnnnnnccccttttggaccaaacgggttacaagcagggtggtctctatcttca |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37387091 |
agcaacacaaacaagacttttaggaaacttatcaagtcctttaagatttttttccccttttggaccaaacgggttacaagcagggtggtctctatcttca |
37386992 |
T |
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| Q |
106 |
ccttctggtaaaaaagctctccaataccaatcacgatcttgtaatctaacaaagtactttccatctaatctcatttcagaatctgttcttttttcaccac |
205 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37386991 |
ccttctggtaaaaaagccctccaataccaatcacgatcttgtaatctaacaaagtactttccatctaatctcatttcagaatctgttcttttttcaccac |
37386892 |
T |
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| Q |
206 |
caaacaaaggatgaagaagaatgtttcctaacacttcaattccttctgctttttcctcacaagctt |
271 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37386891 |
caaacaaaggatgaagaagaatgttccctaacacttcaattccttctgctttttcctcacaagctt |
37386826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 40068165 - 40068056
Alignment:
| Q |
61 |
ccttttggaccaaacgggttacaagcagggtggtctctatcttcaccttctggtaaaaaagctctccaataccaatcacgatcttgtaatctaacaaagt |
160 |
Q |
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||||| |||||||| || ||||||||||| || ||||||||||| ||||| |||| |||||||| |||||||||||| |||||||| || || ||||| | |
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| T |
40068165 |
cctttaggaccaaatggattacaagcaggatgatctctatcttccccttcaggtagaaaagctcgccaataccaatcgcgatcttgcaacctcacaaaat |
40068066 |
T |
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| Q |
161 |
actttccatc |
170 |
Q |
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|||||||||| |
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| T |
40068065 |
actttccatc |
40068056 |
T |
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