View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_high_14 (Length: 254)
Name: NF3552_high_14
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 40039868 - 40039645
Alignment:
| Q |
28 |
ccaattggttgaataattcaattttggataattccttacgtattagttttaccaattattaagaataaacattttgaaatatagttcttatcaccatata |
127 |
Q |
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| T |
40039868 |
ccaattggttgaataattcaattttggataatttcttacgtatt-gttttaccaattattaagaataaacattttgaaatatagttcttatcaccatata |
40039770 |
T |
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| Q |
128 |
tggtcggttattggtggaaagtttgtgaagacagcgaagttcgtatatttaagtggtttggaagaaaatatatccgctaagggaaaaatataagactaca |
227 |
Q |
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| T |
40039769 |
tggtcggttattggtggaaagtttgtgaagacagcgaagttcgtatatataagtggtttggaagaaaatatatccgctaagggaaaaatataagactaca |
40039670 |
T |
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| Q |
228 |
tcatatcagaaagggtattcatcatcc |
254 |
Q |
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| T |
40039669 |
tc--atcagaaagggtactcattatcc |
40039645 |
T |
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