View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3552_high_2 (Length: 419)

Name: NF3552_high_2
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3552_high_2
NF3552_high_2
[»] chr1 (1 HSPs)
chr1 (13-404)||(4145399-4145795)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 4145795 - 4145399
Alignment:
Q  13 aatatcacataatgtttagaatcaagaagagttttaacttggatctcataatgaggaattttatagcggaacgaatgtttaagtgttgttgtgggaatga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4145795 aatatcacataatgtttagaatcaagaagagttttaacttggatctcataatgaggaattttatagcggaacgaatgtttaagtgttgttgtgggaatga 4145696  T
Q  113 attatggttctataggaatgattatgagaaaacaattttgaaccattaagaatctnnnnnnnnnnnnncagtgtgcatgattcaaaatacattagtaggt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||    
T  4145695 attatggttctataggaatgattatgagaaaacaattttgaaccattaagaatctaaaaaaaaaaaaacagtgtgcatgattcaaaatacattagtaggt 4145596  T
Q  213 tgattcgaatccnnnnnnn-actaaattgtttcgaaccacaactccctaaatcgacattcaagattcaagattacttaggtattcgaatcaattaggtaa 311  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4145595 tgattcgaatccttttttttactaaattgtttcgaaccacaactccctaaatcgacattcaagattcaagattacttaggtattcgaatcaattaggtaa 4145496  T
Q  312 gttgatttgaatcacaactttctagctgaaatcatggaacaaaaatcttaggtga----ttcaaatcacctttaagcaagatttgaatcaacatttt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||    
T  4145495 gttgatttgaatcacaactttctagctgaaatcatggaacaaaaatcttaggtgattcattcaaatcacctttaagcatgatttgaatcaacatttt 4145399  T

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