View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_high_21 (Length: 233)
Name: NF3552_high_21
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 37155646 - 37155849
Alignment:
| Q |
18 |
atgttgtggcatataaaggccatcgagggtgccggtgattgttctgcgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatca |
117 |
Q |
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| T |
37155646 |
atgttgtggcatataaaggccatcgatggtgccggtgattgttctgcgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatca |
37155745 |
T |
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| Q |
118 |
gggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcaggacaatattcagctaagtaccattctc |
217 |
Q |
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| T |
37155746 |
gggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcaggacaatattcagctaagtaccattctc |
37155845 |
T |
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| Q |
218 |
tgct |
221 |
Q |
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|||| |
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| T |
37155846 |
tgct |
37155849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 37161293 - 37161450
Alignment:
| Q |
64 |
cgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaa |
163 |
Q |
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| T |
37161293 |
cgaagataagggtcaacggaaagaaggagagtttcaactgctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaa |
37161392 |
T |
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| Q |
164 |
gatgatctgaggtcggaacaccttcaggacaatattcagctaagtaccattctctgct |
221 |
Q |
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| T |
37161393 |
gatgatctgaggttggaacaccttcagtggaatatccagctaagtaccattctctgct |
37161450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 37150534 - 37150718
Alignment:
| Q |
32 |
aaaggccatcgagggtgccggtgattgttctgcgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtc |
131 |
Q |
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||||||| || ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||||||||| || | |
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| T |
37150534 |
aaaggccttcaagggtgccggtgattgttccgcgaagatatggatcaacagagagaaggagagtttcgacgattagatggtcatcagggattgattcatg |
37150633 |
T |
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| Q |
132 |
ggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcaggacaatattcagctaagtaccattct |
216 |
Q |
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|||||||||| |||||||||| ||||||||||||||||| || || |||||||| |||||| | ||| |||||| |||||||||| |
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| T |
37150634 |
ggcaagagaaagagaaacagtgcggagtttaagatgatccgacgttggaacaccctcaggagagtatgcagctacgtaccattct |
37150718 |
T |
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