View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_low_1 (Length: 594)
Name: NF3552_low_1
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 84 - 579
Target Start/End: Complemental strand, 1067767 - 1067277
Alignment:
| Q |
84 |
gagtacctcgtgcgtgtggttttgctttttatatgtttatagcagtgagtgtttttcttgtgagtagaattagcagtgttttccaaccaacattttcttg |
183 |
Q |
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| T |
1067767 |
gagtacctcgtgcgtgtggttttgctttttatatgtttatagtagtgagtgtttttcttgtgagtagaattagcagtgttttccaaccaacattttcttg |
1067668 |
T |
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| Q |
184 |
caaaaaattagtgttgtgtccgatgttagaatttgtctcagttttatagtgtgattggttagtgtccattgtctggctatttttcatgaaatttcaggtg |
283 |
Q |
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| T |
1067667 |
caaaaaattagtgttgtgtccgatgttagaatttgtctcagttttatagtgtgattggttactgtccattgtctggctatttttcatgaaatttcaggtg |
1067568 |
T |
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| Q |
284 |
taccgtgattggaaatttattcaattgtaaggtctggtttggaggcttttgattctaattgtttttgattggttagcaccagcatttctaaacaaatata |
383 |
Q |
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| T |
1067567 |
taccgtgattggaaatttattcaattgtaaggtctggtttggaggcttttgattctaattgtttttgattggttagcaccagcatttctaaacaaacata |
1067468 |
T |
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| Q |
384 |
cttccgacatgtgttagcttgttgacgcccacaaaactgattccgagactcagcaagttaaaaccaatcttgaatgttggtgtctgaaaccgatacgaca |
483 |
Q |
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| T |
1067467 |
cttccgacatgtgttagcttgttgacgcccacaaaactgattccgagactcagcaagttgaaaccaatcttgaatgttggtgtctgaaac-----cgaca |
1067373 |
T |
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| Q |
484 |
ctgacagtgtgacacattaggtcacaagcaactatgtcattttctcaaattattatgggagtcaatttgatagcaatagtgtcttgtccgatatgt |
579 |
Q |
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| T |
1067372 |
ctgacagtctgacacattgggtcacaagcaactatgtcattttctcaaattattatgggagtcaatttgatagcaatagtgtcttgtccgatatgt |
1067277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 1067910 - 1067837
Alignment:
| Q |
5 |
gagtgagatgaatgaaacgaagagaagtgcggggataatgag-aaagccaacgaggtttgcatccatggagtga |
77 |
Q |
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| T |
1067910 |
gagtgaaatgaatgaaacgaagagaagtgcggggataatgagaaaagccagcgaggtttgcatccatggagtga |
1067837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 1067234 - 1067165
Alignment:
| Q |
241 |
gttagtgtccattgtctggctatttttcatgaaatttcaggtgtaccgtgattggaaatttattcaattg |
310 |
Q |
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| T |
1067234 |
gttactgtccattatctggttatttttcatgaaatttcagatgtatagtggttggaaatttattccattg |
1067165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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