View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_low_11 (Length: 315)
Name: NF3552_low_11
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 52985728 - 52986013
Alignment:
| Q |
13 |
aatatcctactattaattaatacacatataaagatcttcttacggtgtcagttttaatttttcaaaaacaacggcaactctcagcatagaaagccttgtt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985728 |
aatatcctactattaattaatacacatataaagatcttcttacggtgtcagttttaatttttcaaaaacaacggcaactctcagcatagaaagccttgtt |
52985827 |
T |
|
| Q |
113 |
tgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcccgca |
212 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985828 |
tgatcattgaactgggatagcaatgggatcaaggcaccatgactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcccgca |
52985927 |
T |
|
| Q |
213 |
cagcctacaatttcagagttatggtgttcagcnnnnnnnntcccagttctactgctattacattttactcccttcaaggttttttc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52985928 |
cagcctacaatttcagagttatggtgttcagcaaaaaaaatcccagttctactgctattacattttactcccttcaaggttttttc |
52986013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 55635392 - 55635245
Alignment:
| Q |
85 |
ggcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaa |
184 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||| ||||||||||||| ||| |||| |||||||| ||||| |||||||||||||||| |||||| |
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| T |
55635392 |
ggcaattctcagcatagaaagccttgcttgctcattcaactgggataacagtggaatcagggcaccatgactgagaacaagatcacggcaccaaggggac |
55635293 |
T |
|
| Q |
185 |
tcaacggcaacgtttcctaatgcccgcacagcctacaatttcagagtt |
232 |
Q |
| |
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||| ||||||||||||| ||||||| | |||||||||||||||||||| |
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| T |
55635292 |
tcaccggcaacgtttcccaatgcccacgcagcctacaatttcagagtt |
55635245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 55665559 - 55665699
Alignment:
| Q |
85 |
ggcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaa |
184 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||| ||||||| ||||| ||||||| ||||||| |||||||||||||||||||||| |||||||| |
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| T |
55665559 |
ggcaactctcagcatagaaagctttgcttgctcattcaactgggttaacagcgggatcagcgcaccatgactgaaaacaagatcacggcacctaggggaa |
55665658 |
T |
|
| Q |
185 |
tcaacggcaacgtttcctaatgcccgcacagcctacaattt |
225 |
Q |
| |
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||| |||||| |||||| ||||||| |||||||| |||||| |
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| T |
55665659 |
tcaccggcaatgtttcccaatgcccacacagcctgcaattt |
55665699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 55659348 - 55659494
Alignment:
| Q |
86 |
gcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaat |
185 |
Q |
| |
|
|||| |||||||||||||||| ||| ||| ||||| ||||||||||||| |||||||| ||||||| ||||| |||||||||||| || ||||||||| |
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|
| T |
55659348 |
gcaattctcagcatagaaagctttgcttgctcattcaactgggataacagcgggatcaacgcaccatgactgagaacaagatcacgacaactaggggaat |
55659447 |
T |
|
| Q |
186 |
caacggcaacgtttcctaatgcccgcacagcctacaatttcagagtt |
232 |
Q |
| |
|
|| ||||||| ||||| |||| || | |||||||||||||||||||| |
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|
| T |
55659448 |
caccggcaacatttcccaatgtccacgcagcctacaatttcagagtt |
55659494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 54862191 - 54862310
Alignment:
| Q |
109 |
tgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcc |
208 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||| |||||||| ||||| |||||||||||| ||| ||||||||||| | |||| |||||| |||||| |
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|
| T |
54862191 |
tgtttggtcattcaactgggataacagcgggatcagggcaccatgactgagaacaagatcacgacacctaggggaatcaccagcaatgtttcccaatgcc |
54862290 |
T |
|
| Q |
209 |
cgcacagcctacaatttcag |
228 |
Q |
| |
|
| | ||||||||| ||||| |
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|
| T |
54862291 |
cacggagcctacaaattcag |
54862310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 240
Target Start/End: Complemental strand, 54627177 - 54627019
Alignment:
| Q |
82 |
aacggcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggg |
181 |
Q |
| |
|
||||||| ||||||| || |||||| | ||| ||||| | ||||||||| | | |||||| |||||| | ||||| |||||||||||||| ||||| |
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|
| T |
54627177 |
aacggcatttctcagcctataaagcccttcttgctcattcagctgggataaaagtaggatcagggcaccgtgactgagaacaagatcacggcctctaggg |
54627078 |
T |
|
| Q |
182 |
gaatcaacggcaacgtttcctaatgcccgcacagcctacaatttcagagttatggtgtt |
240 |
Q |
| |
|
|||||| | |||| |||||| ||||||| | |||||||||||||||||||| ||||||| |
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|
| T |
54627077 |
gaatcaccagcaatgtttcccaatgcccacgcagcctacaatttcagagttttggtgtt |
54627019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 201
Target Start/End: Original strand, 3671912 - 3672027
Alignment:
| Q |
86 |
gcaactctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaat |
185 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| || |||||||||| ||||||| |||||||| ||||| ||||||||||||||| ||||||||| |
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| T |
3671912 |
gcaactctcagcatagaaatatctgtaagctcattcaagtgggataacagcgggatcatggcaccatgactgagaacaagatcacggcaactaggggaat |
3672011 |
T |
|
| Q |
186 |
caacggcaacgtttcc |
201 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
3672012 |
cacaggcaacgtttcc |
3672027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 244
Target Start/End: Complemental strand, 9889646 - 9889518
Alignment:
| Q |
116 |
tcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacggcaacgtttcctaatgcccgcacag |
215 |
Q |
| |
|
||||| || |||||||||| ||||||| |||||||| ||||| |||||||| |||||| ||||||||||| |||||||||||| || |||| | || |
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|
| T |
9889646 |
tcattcaagtgggataacagcgggatcatggcaccatgactgagaacaagataacggcaactaggggaatcacaggcaacgtttcccaacgcccacgaag |
9889547 |
T |
|
| Q |
216 |
cctacaatttcagagttatggtgttcagc |
244 |
Q |
| |
|
||||||||||||||||| | ||||||||| |
|
|
| T |
9889546 |
cctacaatttcagagttttagtgttcagc |
9889518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 232
Target Start/End: Complemental strand, 13401564 - 13401423
Alignment:
| Q |
91 |
tctcagcatagaaagccttgtttgatcattgaactgggataacaatgggatcaaggcaccataactgaaaacaagatcacggcacataggggaatcaacg |
190 |
Q |
| |
|
||||||||| |||||| ||| || ||||| ||||||| ||||| ||||||| |||||||| || | ||||||||| |||||| |||| |||||| | |
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|
| T |
13401564 |
tctcagcattgaaagctttgcctgctcattcaactgggttaacagcgggatcagggcaccatggctaagaacaagatcgcggcacctaggtgaatcacca |
13401465 |
T |
|
| Q |
191 |
gcaacgtttcctaatgcccgcacagcctacaatttcagagtt |
232 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
13401464 |
gcaacatttcccaatgcccacacagcctacaattacagagtt |
13401423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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