View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3552_low_12 (Length: 299)

Name: NF3552_low_12
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3552_low_12
NF3552_low_12
[»] chr5 (1 HSPs)
chr5 (1-299)||(11696661-11696959)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 11696959 - 11696661
Alignment:
Q  1 tcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatcattacagtgtaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696959 tcatctggtgccaaaccttcttcaatcatttctgagaaaactttaagagcttccttaccacgtccatgaatcgcaagaccagatatcattacagtgtaag 11696860  T
Q  101 aaaatctattcttctccgacatattctcgaatacgcgtaaacctttctcaagacatccacacttgacatacatatcaattaacgaagtcttcacaacaac 200  Q
    || |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11696859 aatatctattcttctccgacatatttttgaatacgcgtaaacctttctcaagacatccactcttgacatacatatcaattaacgaagtcttcacaacaac 11696760  T
Q  201 attgagttcactaatgttcctcaacaagatcccgtgtatacactttccaagatcaggagaccctaaatgagtgcaagcagagagcacattaacaagtgt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696759 attgagttcactaatgttcctcaacaagatcccgtgtatacactttccaagatcaggagaccctaaatgagtgcaagcagagagcacattaacaagtgt 11696661  T

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