View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_low_20 (Length: 235)
Name: NF3552_low_20
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 33619240 - 33619355
Alignment:
| Q |
106 |
caacagcacacccatgattccatcacaaaaccaatcgcacgccacatctcataggcaatatagtaccaatagctagcaccacatttatctcaatatgcgt |
205 |
Q |
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| T |
33619240 |
caacagcacgcccatgattccatcacaaaaccaatcgcacgccacatctcataggcaatatagtaccaatagctagcaccacatttatctcaatatgcat |
33619339 |
T |
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| Q |
206 |
tcgctcagatatcaac |
221 |
Q |
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| T |
33619340 |
tcactcagatttcaac |
33619355 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 33619028 - 33619106
Alignment:
| Q |
1 |
caaattaaagaatatatatttgcaatgtcaaatatgttcatatcaacaaatttattaactcttccacatgcacaaggtc |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
33619028 |
caaattaaagaatatatatttgcaatgtcaaatatgttcatatcaacaaatttattaactcttccacctgtacaaggtc |
33619106 |
T |
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