View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3552_low_24 (Length: 218)

Name: NF3552_low_24
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3552_low_24
NF3552_low_24
[»] chr8 (1 HSPs)
chr8 (35-218)||(10589992-10590164)
[»] chr2 (1 HSPs)
chr2 (35-111)||(15803360-15803436)
[»] chr1 (4 HSPs)
chr1 (35-111)||(49102792-49102868)
chr1 (35-107)||(24436754-24436825)
chr1 (35-111)||(25561136-25561211)
chr1 (35-67)||(42806357-42806389)
[»] chr3 (3 HSPs)
chr3 (35-110)||(53888674-53888749)
chr3 (35-69)||(36637987-36638021)
chr3 (35-63)||(9768363-9768391)
[»] scaffold0598 (1 HSPs)
scaffold0598 (35-73)||(9257-9295)
[»] chr4 (1 HSPs)
chr4 (38-110)||(48620471-48620543)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 10589992 - 10590164
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccagaacctatcattccccttccttgtaaactcccaaacaaagccttcatcactaagataaaattttaac 134  Q
    |||||||||||||||||||||     ||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||    
T  10589992 ttctcaattttcccctatatt-----cctcccagaacctttcattccccttccctctaaactcccaaacaaagccttcatgactaacataaaattttaac 10590086  T
Q  135 agttaaagggatttaactcggggaagggattaataatggtggcaacaggcaacagcaaaacataggtggttcttactactttat 218  Q
    |||||| ||      ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10590087 agttaaggg------actcggggaagggattaataacggtggcaacaggcaacagcaaaacataggtggttcttactactttat 10590164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 15803360 - 15803436
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccagaacctatcattccccttccttgtaaactcccaaacaaagcctt 111  Q
    |||||||||||||||||||||||||||| |||| | ||| || ||||||| || |  ||||||||||||||||||||    
T  15803360 ttctcaattttcccctatatttctctccccccaaagcctttccttcccctcccctccaaactcccaaacaaagcctt 15803436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 49102868 - 49102792
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccagaacctatcattccccttccttgtaaactcccaaacaaagcctt 111  Q
    ||||||||||| |||||||||||||||| |||| | ||  || ||||||| || |  ||||||||||||||||||||    
T  49102868 ttctcaatttttccctatatttctctccccccaaagcccttccttcccctcccctccaaactcccaaacaaagcctt 49102792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 24436825 - 24436754
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccagaacctatcattccccttccttgtaaactcccaaacaaag 107  Q
    |||||||||||||||| |||||||| |  |||| ||| | ||||||||||||| | |||| ||||||||||||    
T  24436825 ttctcaattttcccctgtatttctcacaccccaaaacatttcattccccttccctctaaa-tcccaaacaaag 24436754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 25561211 - 25561136
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccagaacctatcattccccttccttgtaaactcccaaacaaagcctt 111  Q
    ||||||||||||| |||||||||||||| |||| | ||| |||||||| |||  |  |||||| |||||||||||||    
T  25561211 ttctcaattttcctctatatttctctcc-cccaaagcctttcattccctttcgctacaaactcgcaaacaaagcctt 25561136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 42806357 - 42806389
Alignment:
Q  35 ttctcaattttcccctatatttctctcctccca 67  Q
    |||||||||| ||||||||||||||||||||||    
T  42806357 ttctcaatttacccctatatttctctcctccca 42806389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 53888674 - 53888749
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccagaacctatcattccccttccttgtaaactcccaaacaaagcct 110  Q
    |||||||||||||||||||||| | ||| |||| | ||| || ||||||| || |  |||||||||||||||||||    
T  53888674 ttctcaattttcccctatatttttgtccacccaaagcctttccttcccctcccctccaaactcccaaacaaagcct 53888749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 36637987 - 36638021
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccaga 69  Q
    |||||||||||||||||||||| ||||||||||||    
T  36637987 ttctcaattttcccctatatttatctcctcccaga 36638021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 9768363 - 9768391
Alignment:
Q  35 ttctcaattttcccctatatttctctcct 63  Q
    |||||||||||||||||||||||||||||    
T  9768363 ttctcaattttcccctatatttctctcct 9768391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 9295 - 9257
Alignment:
Q  35 ttctcaattttcccctatatttctctcctcccagaacct 73  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  9295 ttctcaatttccccctatatttctctcctcccaaaacct 9257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 48620471 - 48620543
Alignment:
Q  38 tcaattttcccctatatttctctcctcccagaacctatcattccccttccttgtaaactcccaaacaaagcct 110  Q
    |||||||| |||||||||||||||| |||| | ||| || ||||||| || |  |||||| ||||||||||||    
T  48620471 tcaatttttccctatatttctctccccccaaagcctttccttcccctcccctccaaactcgcaaacaaagcct 48620543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University