View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3552_low_25 (Length: 204)
Name: NF3552_low_25
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_low_25 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 52985688 - 52985485
Alignment:
| Q |
1 |
ttggttttttctaatgatgaaaattgaaaacagatgcatgttgggcaatctcatatcgtactgatggaacaaatgacataatccaagaggtgattgaggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52985688 |
ttggttttttctaatgatgaaaattgaaaacagatgcatgttgggcaatctcatatctttctgatggaacaaatgacataatccaagaggtgattgaggc |
52985589 |
T |
|
| Q |
101 |
aggtatatgcggcagactggtggagctacttctgtaagtaccaattttcgatccctggtcaaccaatttttgttgcaattattgattattttggctctaa |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52985588 |
aggtatatgtggcagactggtggagctacttctgtaagtaccaattttcgatccctggtcaaccaatttttgttgcaattattgattattttggctctaa |
52985489 |
T |
|
| Q |
201 |
atgt |
204 |
Q |
| |
|
|||| |
|
|
| T |
52985488 |
atgt |
52985485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 55665358 - 55665185
Alignment:
| Q |
33 |
gatgcatgttgggcaatctcatatcgtactgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagctacttc |
132 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||||||||| |||||||| ||||| ||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
55665358 |
gatgcatgttgggcattctcatatctttctgatggaacaaatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttc |
55665259 |
T |
|
| Q |
133 |
tgtaagtaccaa-ttttcgatccctggtcaaccaat-ttttgttgcaattattgattattttggctctaaatgt |
204 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55665258 |
agtaagtaccaatttttctatccctggtgcaccaataatttgtttcaattattgattattttggctctaaatgt |
55665185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 54861966 - 54861796
Alignment:
| Q |
33 |
gatgcatgttgggcaatctcatatcgtactgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagctacttc |
132 |
Q |
| |
|
|||||||| |||||| |||| |||| | |||||||||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||| |||| |||| |
|
|
| T |
54861966 |
gatgcatggtgggcactctcgtatctttctgatggaacaaatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagactggtgcagctccttc |
54861867 |
T |
|
| Q |
133 |
tgtaagtaccaattttcgatccctggtcaaccaat-ttttgttgcaattattgattattttggctctaaat |
202 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
54861866 |
tgtaagtaccaattcttattccctggtcagccaatattctattgcaattattgattattttggctctaaat |
54861796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 55635595 - 55635771
Alignment:
| Q |
31 |
cagatgcatgttgggcaatctcata-tcgtactgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagctac |
129 |
Q |
| |
|
|||||||||| |||||| ||||||| | | ||||||||| ||||||| |||||||| ||||| | |||||| |||| ||||||||||||||||| | |
|
|
| T |
55635595 |
cagatgcatgctgggcactctcataatatttctgatggaatgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctcc |
55635694 |
T |
|
| Q |
130 |
ttctgtaagtaccaatt-ttcgatccctggtcaaccaatttt-tgttgcaattattgattattttggctctaaatgt |
204 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| |||||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
55635695 |
ttctgtaagcaccaattcttctatccctgttcaaccaattttctattgcaattattgattattttgcctctaaatgt |
55635771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 54627379 - 54627549
Alignment:
| Q |
36 |
gcatgttgggcaatctcatatcgtactgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagctacttctgt |
135 |
Q |
| |
|
|||||||||||| |||| |||| | |||||||||||| ||| | ||||||| |||||| ||||||||| |||| || ||||||||| | | ||||||| |
|
|
| T |
54627379 |
gcatgttgggcactctcgtatctttctgatggaacaagtgataatatccaagcggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctgt |
54627478 |
T |
|
| Q |
136 |
aagtaccaatt-ttcgatccctggtcaaccaat-ttttgttgcaattattgattattttggctctaaatgt |
204 |
Q |
| |
|
||||||||||| || |||||| |||||||||| || | |||||| ||||||||||||||||||||||||| |
|
|
| T |
54627479 |
aagtaccaattcttatatccctcgtcaaccaatgttctattgcaagtattgattattttggctctaaatgt |
54627549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 3671794 - 3671698
Alignment:
| Q |
31 |
cagatgcatgttgggcaatctcatatcgtactgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagct |
127 |
Q |
| |
|
|||||||||| |||||| ||||||||| | |||||||||||||||||| |||||||| |||||| ||||||||| | || ||||||||||||||||| |
|
|
| T |
3671794 |
cagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagactggtggagct |
3671698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 55659106 - 55658972
Alignment:
| Q |
70 |
caaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagctacttctgtaagtaccaatt-ttcgatccctggtcaaccaatt |
168 |
Q |
| |
|
|||||||| |||||||| ||| || ||||| || ||||| | ||||| || ||||| ||| |||||||||||| | || |||||||||||||||||| |
|
|
| T |
55659106 |
caaatgacgaaatccaagcggtaatcgaggctggcatatgtgatagactagtagagctccttttgtaagtaccaaatcttatatccctggtcaaccaatt |
55659007 |
T |
|
| Q |
169 |
tt-tgttgcaattattgattattttggctctaaat |
202 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||| |
|
|
| T |
55659006 |
ttctgttgcaattgttgattattttggctctaaat |
55658972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 9889874 - 9889989
Alignment:
| Q |
31 |
cagatgcatgttgggcaatctcatatcgtactgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagctact |
130 |
Q |
| |
|
|||||||||| |||||| ||||||||| | |||||||||||||||||| |||||||| |||||| ||||||||| |||| ||||||||||||||||| || |
|
|
| T |
9889874 |
cagatgcatgctgggcactctcatatctttctgatggaacaaatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctcct |
9889973 |
T |
|
| Q |
131 |
tctgtaagtaccaatt |
146 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
9889974 |
tttgtaagtaccaatt |
9889989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 13401774 - 13401884
Alignment:
| Q |
30 |
acagatgcatgttgggcaatctcatatcgtactgatggaacaaatgacataatccaagaggtgattgaggcaggtatatgcggcagactggtggagctac |
129 |
Q |
| |
|
||||||||||| |||||| |||| |||| | |||||||||||||||||| |||||||| |||||||||||||||| |||| |||||||| ||| |||| | |
|
|
| T |
13401774 |
acagatgcatgctgggcactctcttatctttctgatggaacaaatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagactagtgcagctcc |
13401873 |
T |
|
| Q |
130 |
ttctgtaagta |
140 |
Q |
| |
|
|||||| |||| |
|
|
| T |
13401874 |
ttctgtgagta |
13401884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University