View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_low_3 (Length: 395)
Name: NF3552_low_3
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 92 - 384
Target Start/End: Original strand, 20060304 - 20060600
Alignment:
| Q |
92 |
gaggcagagtacaaagctttggcctcaactaaatgtgaaattcaatggattctctacctgctccatgaccttcacatcacttgttctaagctccctgtcc |
191 |
Q |
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| T |
20060304 |
gaggcagaatacaaagctttggcctcagctacatgtgaaattcaatggattctctacctgctccatgaccttcacatcacttgttctaagctccctgtcc |
20060403 |
T |
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| Q |
192 |
tttattgtgatatctagagtgatctccatattgctgcaaacccagtttttcatgaaaggagcagacatttgaagattggctgtcatattgttagagagaa |
291 |
Q |
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| T |
20060404 |
tttattgtgataactagagtgatttccatattgctgcaaacccaatttttcatgaaaggagcaaacatttggagattgactgtcatattattagagagaa |
20060503 |
T |
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| Q |
292 |
actataactggtgttatgaagttgtttccagtttcttctcaagaccaaatatctttgatg----tatatataactcatgtaacatacaatttattca |
384 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |
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| T |
20060504 |
actgtaactggtgttatgaagttgtttccagtttcttctcaagaccaaatatctttgatgtatatatatataactcatgtaacaaacaattcattca |
20060600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 20060271 - 20060307
Alignment:
| Q |
19 |
atgcttcttcttaggtcattccctcatttcttggagg |
55 |
Q |
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| T |
20060271 |
atgcttcttcttaggtcattccctcatttcttggagg |
20060307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 22645456 - 22645779
Alignment:
| Q |
19 |
atgcttcttcttaggtcattccctcatttcttggaggactaagaagcaaaacactatctccatattttcttatgaggcagagtacaaagctttggcctca |
118 |
Q |
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| T |
22645456 |
atgcttctttttaggtaactccctcatttcttggaggaccaagaaacaaaccactgtctctaggtcctcatctgaggcagaatacagggctttggcatca |
22645555 |
T |
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| Q |
119 |
actaaatgtgaaattcaatggattctctacctgctccatgaccttcacatcacttgttctaagctccctgtcctttattgtgatatctagagtgatctcc |
218 |
Q |
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||| |||||||||||||||| ||||||| |||| |||| |||||||| |||||||| |||| ||||| || |||||||||| | |||||| || | |
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| T |
22645556 |
gctacatgtgaaattcaatggcttctctatttgctgaatgatcttcacattacttgttccaagcctcctgtgctctattgtgataaccagagtgcccttc |
22645655 |
T |
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| Q |
219 |
atattgctgcaaacccagtttttcatgaaaggagcagacatttgaagattggctgtcatattgttagagagaaactataa-ctggtgttatgaagttgtt |
317 |
Q |
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| T |
22645656 |
atattgctgccaaccctgtcttccatgagagaaccaaacatttggagattgactgtcatattgttagagaaaaattgcaagctggtgttctgaaacttct |
22645755 |
T |
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| Q |
318 |
tccagtttcttctcaagaccaaat |
341 |
Q |
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| T |
22645756 |
cccagtttcttctcaagatcaaat |
22645779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 26464820 - 26464747
Alignment:
| Q |
178 |
taagctccctgtcctttattgtgatatctagagtgatctccatattgctgcaaacccagtttttcatgaaagga |
251 |
Q |
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|||||| | ||| ||||||||||||| | |||||| ||| || ||||| ||||| ||||| ||||||||||||| |
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| T |
26464820 |
taagcttcatgtgctttattgtgataaccagagtgctcttcacattgcagcaaatccagtgtttcatgaaagga |
26464747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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