View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3552_low_4 (Length: 393)
Name: NF3552_low_4
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 52 - 388
Target Start/End: Original strand, 41776873 - 41777209
Alignment:
| Q |
52 |
cagtcacgcacctatctacatcggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccactgat |
151 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41776873 |
cagtcacgcacctagctacattggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccaccaat |
41776972 |
T |
|
| Q |
152 |
gtggctgactgcgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41776973 |
gtggctgactgcgtgactgcattagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaa |
41777072 |
T |
|
| Q |
252 |
aacttaagcaatttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaatt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41777073 |
aacttaagcaatttaacttacaaggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaatt |
41777172 |
T |
|
| Q |
352 |
ctacctgctcaagaggttccccattccctatgctact |
388 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
41777173 |
ctacctactcaagaggttccccattccctatggtact |
41777209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 41776824 - 41776863
Alignment:
| Q |
19 |
acataccctttcacatgcggattggattttgtgcagtcac |
58 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41776824 |
acataccctttcacatgtggattggattttgtgcagtcac |
41776863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 41308303 - 41308348
Alignment:
| Q |
148 |
tgatgtggctgactgcgtgactgcattagattatgcctacacacaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
41308303 |
tgatgtggctgactgcgtgactgcatcagattgtgactacatacaa |
41308348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 26957042 - 26956953
Alignment:
| Q |
283 |
attgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctgctcaagaggttccc |
372 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||| | |||||||||||||| |
|
|
| T |
26957042 |
attgtaggttgctagtgcaacagcaacatttgtgatgatgttttcatcatctttgtctgtttttgagttctacattctcaagaggttccc |
26956953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University