View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3552_low_9 (Length: 338)
Name: NF3552_low_9
Description: NF3552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3552_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 27635594 - 27635281
Alignment:
| Q |
1 |
agtacgtacctcttcagtcatctcaaaaccaagggccctgcaaagaaagaaagataagaataagatgtatgttatgaaaacaacaacatacatacacagt |
100 |
Q |
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| T |
27635594 |
agtacgtacttcttcagtcatctcaaaaccaagggccctgcaaagaaaga----taagaataagatgtatgttatgaaaacaacaacataca----cagt |
27635503 |
T |
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| Q |
101 |
tattaatgnnnnnnntaacaacaatacaatacctcatagcaacattaagttccttggcatcgatagtacctaaaaatcatcaaacaaagtattagtataa |
200 |
Q |
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| T |
27635502 |
tattaatgaaaaaaataacaacaatacaatacctcatagcaacattaagttccttggcatcgatagtacctaaaaatcatcaaacaaagtattagtataa |
27635403 |
T |
|
| Q |
201 |
agaggagatcaagaatatttttgagtg-ttgatggtaaaagtgtaaacctgagccatcagtgtcgaataattcaaaagcttctttaatctcttgtctttt |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27635402 |
agaggagatcaagaatatttttgagtgtttgatggtaaaagtgtaaacctgagccatcagtgtcgaataattcaaaagcttctttaatctcttgtctttt |
27635303 |
T |
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| Q |
300 |
ctgttgtgtcaaatgatgtttt |
321 |
Q |
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|||||||||||||||||||||| |
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| T |
27635302 |
ctgttgtgtcaaatgatgtttt |
27635281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 1679789 - 1679867
Alignment:
| Q |
126 |
acaatacctcatagcaacattaagttccttggcatcgatagtacctaaaaatcatcaaa--caaagtattagtataaag |
202 |
Q |
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| T |
1679789 |
acaatacctcatggcaacattcagctccttagcatcaatagtacctaaaaatcatcaaagtcaaagtattagcataaag |
1679867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 1679923 - 1679979
Alignment:
| Q |
246 |
acctgagccatcagtgtcgaataattcaaaagcttctttaatctcttgtcttttctg |
302 |
Q |
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| T |
1679923 |
acctgagccatcagtatcgaataactcaaaagcttccttgatctcctgtctcttctg |
1679979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 1679677 - 1679716
Alignment:
| Q |
7 |
tacctcttcagtcatctcaaaaccaagggccctgcaaaga |
46 |
Q |
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| T |
1679677 |
tacctcttctgtcatctcaaatccaagggccctgcaaaga |
1679716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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