View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3553_high_7 (Length: 314)
Name: NF3553_high_7
Description: NF3553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3553_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 113 - 308
Target Start/End: Complemental strand, 32903472 - 32903277
Alignment:
| Q |
113 |
tacccgaaagtccccatcactcgagtagaaacatgactattgagatcagaagcagtctttgcaagaccaaaatctgcaacctgtcaacagaaatttgata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32903472 |
tacccgaaagtccccatcactcgagtagaaacatgagtgttgagatcagaagcaatctttgcaagaccaaaatcagcaacctgtcaacagaaatttgata |
32903373 |
T |
|
| Q |
213 |
ctaaattaaactaaaattcacaacttcttagaactttttaaacagtgcatcgtcactaccacaaggaagacgtgtaataaaatatacctttgcttc |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||| |||||| | ||||| || ||||||||||||| |
|
|
| T |
32903372 |
ctaaattaaactaaaattcacaacttattagaacattttaaacagtgcatcaccactatcacagggaagatgcgtaatggaacatacctttgcttc |
32903277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 113 - 308
Target Start/End: Complemental strand, 32870170 - 32869972
Alignment:
| Q |
113 |
tacccgaaagtccccatcactcgagtagaaacatgactattgagatcagaagcagtctttgcaagaccaaaatctgcaacctgtcaacagaaatttgata |
212 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||| | || ||||| | | |||||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
32870170 |
tacccgaaagtccccttcacttgagtagaaacgtgagtgctggaatcaggtgaatcctttgcaagaccaaaatcagcaacctttcaacagaaattcgata |
32870071 |
T |
|
| Q |
213 |
ctaaattaaactaaaattcacaacttc----ttagaactttttaaacagtgcatcgtcactaccacaaggaagacgtgtaataaaatatacctttgcttc |
308 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||| |||||| ||||| ||||||| || ||||||||||||| |
|
|
| T |
32870070 |
ctaaattaaactaatattcacaacttaattattagaacattttaaacagtgcatcaccactgccacaa-gaagatgtgtaatggaacatacctttgcttc |
32869972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University