View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3553_low_1 (Length: 253)
Name: NF3553_low_1
Description: NF3553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3553_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 642371 - 642560
Alignment:
| Q |
42 |
caataaccatgcaatacaatgctgaaaagggtgatgaaaaagagacatataaagaacagaaaaagtcttaaaatctcaaagggtattcnnnnnnnggtga |
141 |
Q |
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| T |
642371 |
caataaccatgcaatacaatgctgaaaagggtgatgaaaaagagacatataaagaacagaaaaagtcttaaaatctcaaagggtattcaaaaaaaggtga |
642470 |
T |
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| Q |
142 |
aacataagaaattaatgaagttggatctagatcatataaatagtactataagagttcaaaagaaacattgaatttctaaccttttgagat |
231 |
Q |
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| T |
642471 |
aacataagaaattcatgaagttggatctagatcatataaatagtactataagagttcaaaagaaacattgaatttctaaccttttgagat |
642560 |
T |
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