View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_1 (Length: 715)
Name: NF3554_high_1
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 18 - 698
Target Start/End: Complemental strand, 41574332 - 41573671
Alignment:
| Q |
18 |
tatgaaacaccgtttacaacttatattttctcattattatcactggaaaaaataagcattgtgcccgacgaaaactatatatgtagtttttggtacaatt |
117 |
Q |
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| T |
41574332 |
tatgaaacaacgtttacaacttatattttctcattattatcactggaaaaaataagcattgtgcccgacgaaaactatatatgtagtttttggtacaatt |
41574233 |
T |
|
| Q |
118 |
accaaataaagtatgtactataaaattatacgggcaaaatcaaatcaaattagtgcttttgaacaatgaaataagactaaagattgaaatgtatcatcta |
217 |
Q |
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| T |
41574232 |
accaaataaagtatgtactataaaattatacgggcaaa-tcaaatcaaattagtgcttttgaacaatgaaat------------------gtatcatcta |
41574152 |
T |
|
| Q |
218 |
tctatacttgcatgcagcagcagaatagacttcaagtggataagccagctacatatgccaccccagtagagggcaaccaagtggaccctgatatgaattg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41574151 |
tctatacttgcatgcagcagcagaatagacttcaagtggataagccagctacatatgccaccccagtagagggcaaccaagtggaccccgatatgaattg |
41574052 |
T |
|
| Q |
318 |
ggccaccgtgaatctatttgcttccacggtggatgtaataacccgatacccaggccactttacacgttgcccaatagctccaccaggtccataattcatg |
417 |
Q |
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| T |
41574051 |
ggccaccgtgaatctatttgcttccacggtggatgtaataacccgatacccaggccactttacacgttgcccaatagctccaccaggtccataattcatg |
41573952 |
T |
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| Q |
418 |
tattccccataatacaaagtgtctaaagcaaatgttgtattccactctaaccatccacgtggatgtacatgatctcccatgtaagataacatgtacactg |
517 |
Q |
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| T |
41573951 |
tattcaccataatacaaagtgtctaaagcaaatgttgtattccactctaaccatccacgtggatgtacatgatctcccatgtaagataacatgtacactg |
41573852 |
T |
|
| Q |
518 |
ttctagagtatagtttccatggacggccaagatatgttgtgaaatttcccttggaggcttcaagatcttgtgtggctaggattctacagttgtggatgga |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41573851 |
ttctagagtatagtttccatggacggccaagatatgttgtgaaatttcccttggaggcttcaagatcttgtgtggctaggatcctacagttgtggatgga |
41573752 |
T |
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| Q |
618 |
tataccagtgttctgatttgggtcttttctgttttgggctgtgatggtgnnnnnnnggtagggcataggctttcttgcata |
698 |
Q |
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| T |
41573751 |
tataccagtgttctgatttgggtcttttctgttttgggctgtgatggtgtttttttggtagggcataggctttcttgcata |
41573671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 310 - 555
Target Start/End: Original strand, 744836 - 745081
Alignment:
| Q |
310 |
atgaattgggccaccgtgaatctatttgcttccacggtggatgtaataacccgatacccaggccactttacacgttgcccaatagctccaccaggtccat |
409 |
Q |
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|||||||||||||| || ||||||| || |||| || || ||||| ||||||||||| ||||| || || ||||| || ||||| | || |||||| |
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| T |
744836 |
atgaattgggccacggtatatctattggcctccagagttgaagtaatgacccgatacccgggccatttgacccgttgtccgatagccgcgcccggtccaa |
744935 |
T |
|
| Q |
410 |
aattcatgtattccccataatacaaagtgtctaaagcaaatgttgtattccactctaaccatccacgtggatgtacatgatctcccatgtaagataacat |
509 |
Q |
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| T |
744936 |
aattcatgtactcaccataatacaaagtttttaaagcaaagtcaccattccattccaaccatccatgtggatgcacatgatcacccatataggacaacat |
745035 |
T |
|
| Q |
510 |
gtacactgttctagagtatagtttccatggacggccaagatatgtt |
555 |
Q |
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| T |
745036 |
atatacagtcctagaatacattttccatggacgacccaaatatgtt |
745081 |
T |
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