View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_11 (Length: 460)
Name: NF3554_high_11
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 27326830 - 27327232
Alignment:
| Q |
18 |
agtctagtcgtgtgagttgatatgtttaacgagtattaagaaggaggttcatagttcaatccttgttattattaactaactctctcttgttctaacaaat |
117 |
Q |
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| T |
27326830 |
agtctagtcgtgtgagttgatatgtttaactagtattaagaaggaggttcatagttcaatccttgttattattaactaactctctcttgttctaacaaat |
27326929 |
T |
|
| Q |
118 |
taaccactaatggtttgatttatgattaattactgaagctaatcaatcatggtgtgtcggagacgctgagggatgaggttttaagaacaagccaatgctt |
217 |
Q |
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| T |
27326930 |
taaccactaatggtttgttttatgattaattactgaagctaatcaatcatggggtatctgagacgctgagggatgaggttttaagaacaagccaatgctt |
27327029 |
T |
|
| Q |
218 |
tttcgatctgccaagtgaagnnnnnnnggagtacataagtgaaaagctatttgatccaattagatgtggtacaagctttaatttgaaggtagacaaaacc |
317 |
Q |
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| T |
27327030 |
tttcgatctgccaagtgaagaaaaaaaggagtacataagtgaaaagctatttgatccaattagatgtggtacaagctttaatttgaaggtagacaaaacc |
27327129 |
T |
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| Q |
318 |
ctctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttccaagccccctgggtttaggtatatcattcttcttgcacttttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27327130 |
ctctattggagagattatctcaaatgttatgttcatcctcaatttgatgctccttccaagccccctgggtttaggtatatcattcttcttgcacttttat |
27327229 |
T |
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| Q |
418 |
tac |
420 |
Q |
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| T |
27327230 |
tac |
27327232 |
T |
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