View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_13 (Length: 447)
Name: NF3554_high_13
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 206 - 433
Target Start/End: Complemental strand, 30956910 - 30956683
Alignment:
| Q |
206 |
atagaattaaatttcaacaaaaacaacctaggttttgataactaattcaccatggaattcagctaccttcaagatgattcaaagagctcgagcgatgaaa |
305 |
Q |
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| T |
30956910 |
atagaattaaatttcaacaaaaacaacctaggttttgataactaattcaccatggaattcagctaccttcaagatgattcaaagagctcgagcgatgaaa |
30956811 |
T |
|
| Q |
306 |
acatcgatcgatcatctgaccaaaacaacgatgatgatcatgatcatcacatgggaattggtaggtcctatgagtgtgtgttttgcaaaagaggtttcac |
405 |
Q |
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| T |
30956810 |
acatcgatcgatcatctgaccaaaacaacgatgatgatcatgatcatcacatgggaattggtagatcctatgagtgtgtgttttgcaaaagaggtttcac |
30956711 |
T |
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| Q |
406 |
aactgctcaagctttaggtggacacatg |
433 |
Q |
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| T |
30956710 |
aactgctcaagctttaggtggacacatg |
30956683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 30957107 - 30956973
Alignment:
| Q |
9 |
gagatgaatccaaagccggctaacagaataaatctgtaagcaaacttctaagacttttccactttacaccacacattcacttgaccatacatctttaggt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30957107 |
gagatgaatccaaagccggctaacagaataaatctgtaagcaaacttctaagacttttccactttacaccacacattcacttgaccatacatctttaggt |
30957008 |
T |
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| Q |
109 |
aatgcctatgcccttcatttgtctcttcctcaaac |
143 |
Q |
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| T |
30957007 |
aatgcctatgcccttcatttgtctcttcctcaaac |
30956973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 33406374 - 33406421
Alignment:
| Q |
386 |
ttttgcaaaagaggtttcacaactgctcaagctttaggtggacacatg |
433 |
Q |
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|||||||||||||| ||||||| ||| |||||||||||||| |||||| |
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| T |
33406374 |
ttttgcaaaagaggattcacaaatgcacaagctttaggtggtcacatg |
33406421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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