View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_high_15 (Length: 420)

Name: NF3554_high_15
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_high_15
NF3554_high_15
[»] chr6 (6 HSPs)
chr6 (11-266)||(16571024-16571278)
chr6 (268-405)||(16570842-16570979)
chr6 (71-394)||(16872767-16873113)
chr6 (71-394)||(16579448-16579794)
chr6 (71-394)||(16615586-16615932)
chr6 (317-405)||(17040305-17040394)
[»] chr2 (4 HSPs)
chr2 (55-405)||(32790909-32791279)
chr2 (55-260)||(236357-236562)
chr2 (271-368)||(236589-236687)
chr2 (13-42)||(32791317-32791346)
[»] scaffold0256 (2 HSPs)
scaffold0256 (55-263)||(12471-12681)
scaffold0256 (160-263)||(14948-15051)
[»] chr1 (2 HSPs)
chr1 (55-241)||(7389262-7389448)
chr1 (271-368)||(7389118-7389216)
[»] chr7 (2 HSPs)
chr7 (62-260)||(48300790-48300988)
chr7 (271-368)||(48301015-48301113)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 16571278 - 16571024
Alignment:
Q  11 cataggttcatcctggagcctctcaacatattgacgcatgtaagaaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16571278 cataggttcatcctggagcctctcaacatattgacgcatgtaagaaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattg 16571179  T
Q  111 gtccgttatagtcggaccctt-acttagtttaattctcatctggctcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatga 209  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16571178 gtccgttatagtcggacccttaacttagtttaattctcatctggctcaactgaatcatcagcctttatgtttggttgctgcgctagaatatcgagaatga 16571079  T
Q  210 ccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacga 266  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  16571078 ccaaaatattctgcacacattttttccacac--atataagcacatgcccaccaacga 16571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 268 - 405
Target Start/End: Complemental strand, 16570979 - 16570842
Alignment:
Q  268 tttgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaactgttcaacttgttcaaaccttccagt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16570979 tttgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaactgttcaacttgttcaaaccttccagt 16570880  T
Q  368 tttattccttcccctagccgccacaagatctttgaact 405  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  16570879 tttattccttctcctagccgccacaagatctttgaact 16570842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 71 - 394
Target Start/End: Complemental strand, 16873113 - 16872767
Alignment:
Q  71 ttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatgaatcatcag 170  Q
    |||| |||||||  ||||||| ||| |||||||||||| | |||||||||||||| ||||| |||||||| |||||||||||||||   ||||||||||     
T  16873113 ttttttaagaaagaaactaagtttccccaaacacgaatcgatccgttatagtcggcccctttcttagtttcattctcatctggctcctctgaatcatcaa 16873014  T
Q  171 cctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaa------- 263  Q
    | |||| |||||| |  ||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||           
T  16873013 catttatgtttggatattgcacaagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggct 16872914  T
Q  264 cgaatt------------tgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaa---ctgttca 347  Q
     |||||             |||||||||||||||||||||||||| |||| || ||||||| || | ||||||||||||| |||||||||    || |||    
T  16872913 tgaattaacatcaaactgagcagaaaccacactaaaaagaatttgaagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatca 16872814  T
Q  348 acttgttcaaaccttccagttttattccttcccctagccgccacaag 394  Q
    ||||||||||||||| || |||| |||||||||||| | ||||||||    
T  16872813 acttgttcaaacctttcaattttcttccttcccctaactgccacaag 16872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 71 - 394
Target Start/End: Complemental strand, 16579794 - 16579448
Alignment:
Q  71 ttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatgaatcatcag 170  Q
    |||| ||||||| |||||||| ||| ||||||||||||   | |||||||||||| ||||| |||||||| | |||||| ||||||   ||||||||||     
T  16579794 ttttttaagaaagcaactaagtttccccaaacacgaatcaatacgttatagtcggcccctttcttagtttcactctcatatggctcctctgaatcatcaa 16579695  T
Q  171 cctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaa------- 263  Q
    | |||| |||||| | |||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||| |||||||||||           
T  16579694 catttatgtttggatactgcacaagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggct 16579595  T
Q  264 cgaatt------------tgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaa---ctgttca 347  Q
     |||||             ||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||| |||||||||    || |||    
T  16579594 tgaattaacatcaaactgagcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatca 16579495  T
Q  348 acttgttcaaaccttccagttttattccttcccctagccgccacaag 394  Q
    ||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  16579494 acttgttcaaacctttcagttttcttccttcccctaactgccacaag 16579448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 71 - 394
Target Start/End: Original strand, 16615586 - 16615932
Alignment:
Q  71 ttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatgaatcatcag 170  Q
    |||| ||||||| |||||||| ||| ||||||||||||   | |||||||||||| ||||| |||||||| | |||||| ||||||   ||||||||||     
T  16615586 ttttttaagaaagcaactaagtttccccaaacacgaatcaatacgttatagtcggcccctttcttagtttcactctcatatggctcctctgaatcatcaa 16615685  T
Q  171 cctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaa------- 263  Q
    | |||| |||||| | |||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||| |||||||||||           
T  16615686 catttatgtttggatactgcacaagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggct 16615785  T
Q  264 cgaatt------------tgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaa---ctgttca 347  Q
     |||||             ||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||| |||||||||    || |||    
T  16615786 tgaattaacatcaaactgagcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatca 16615885  T
Q  348 acttgttcaaaccttccagttttattccttcccctagccgccacaag 394  Q
    ||||||||||||||| ||||||| |||||||||||| | ||||||||    
T  16615886 acttgttcaaacctttcagttttcttccttcccctaactgccacaag 16615932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 17040305 - 17040394
Alignment:
Q  317 tagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaact 405  Q
    |||||||||| | ||||||||||| |||||||||||| |||| |||||||| ||| ||||||||||||||||||||||| | ||||||||    
T  17040305 tagccaatttagctaggtaggtaagctgttcaacttgctcaagccttccagatttcttccttcccctagccgccacaagctgtttgaact 17040394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 55 - 405
Target Start/End: Complemental strand, 32791279 - 32790909
Alignment:
Q  55 aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggc 154  Q
    ||||||||||| ||| ||||||| |||| |||||||| ||| | |||||||||| ||||||||||||| || ||||| |||| ||| |||||| ||| ||    
T  32791279 aaactcagcatatattttttctatgaaagcaactaagtttcccgaaacacgaatcggtccgttatagttggcccctttcttaatttcattctcttcttgc 32791180  T
Q  155 tcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacat 254  Q
    |||| |||||||||| |||||| |||||| |||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| ||    
T  32791179 tcaactgaatcatcaacctttatgtttgggtgctgcaccagaatatcaagaatgaccaacatattctgcacacattttttccacacatttataggcaaat 32791080  T
Q  255 gcccaccaacga-------att------------tgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggta 335  Q
    |||| |||| ||       |||             ||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||    
T  32791079 gccccccaatgaggcttggattaacatcaaactgagcaaaaaccacactaaaaagaatttgcagcttttgtgcaggtgttttagccaattttgttaggta 32790980  T
Q  336 ggtaa-ctgttcaacttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaact 405  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32790979 ggtaagctgttcaacttgttcaaaccttccagttttattccttcccctagctgccacaagctctttgaact 32790909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 260
Target Start/End: Original strand, 236357 - 236562
Alignment:
Q  55 aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggc 154  Q
    |||||| |||| ||| |||||||||||| |||||||| | | ||| ||| |||| ||||||| ||||||   ||||| |||||||| |||||| ||| ||    
T  236357 aaactcggcatctattttttctaagaaagcaactaagttaccccagacatgaatgggtccgtcatagtcatcccctttcttagtttcattctcgtctagc 236456  T
Q  155 tcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacat 254  Q
    || |  ||||||||| |||||| |||||| |||||| | ||||| ||||| |||||||  || ||||||||||| ||||||||||||| |||  ||| ||    
T  236457 tccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgaggatgaccagcatgttctgcacacactttttccacacatttatgggcatat 236556  T
Q  255 gcccac 260  Q
    ||||||    
T  236557 gcccac 236562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 236589 - 236687
Alignment:
Q  271 gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagtt 368  Q
    |||||||||||||| ||||||||||||||||| |  |||||| || |||| | ||||| |||| | |||| ||| ||||| ||||||||||||||||||    
T  236589 gcagaaaccacactgaaaagaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaagtaagctgctcaacctgttcaaaccttccagtt 236687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 32791346 - 32791317
Alignment:
Q  13 taggttcatcctggagcctctcaacatatt 42  Q
    ||||||||||||||||||||||||||||||    
T  32791346 taggttcatcctggagcctctcaacatatt 32791317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 55 - 263
Target Start/End: Original strand, 12471 - 12681
Alignment:
Q  55 aaactcagcatttat-gttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttat-agtcggacccttacttagtttaattctcatctg 152  Q
    ||||||||||||||| |||||||||||||| |  |||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |    
T  12471 aaactcagcatttattgttttctaagaaattatttaagcttccccaaacacgaattggtacgttattagtcggaccctttcttagtttaattctcatcag 12570  T
Q  153 gctcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcac 252  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||     
T  12571 gctcaactgaatcataagcctttatgtttggttgctgcgctagaatatctagaattaccaaaatattctgctcacattttttccacacatttataagcat 12670  T
Q  253 atgcccaccaa 263  Q
    |||||||||||    
T  12671 atgcccaccaa 12681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 14948 - 15051
Alignment:
Q  160 tgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgccca 259  Q
    |||||||||| |  ||| |||||| ||||||   ||||||| ||||||||| |  | |||||||||| |||||||||||| || |||| ||| |||||||    
T  14948 tgaatcatcaacagttatgtttggatgctgccgaagaatattgagaatgacaatcaaattctgcacaaattttttccacatatttatatgcatatgccca 15047  T
Q  260 ccaa 263  Q
    ||||    
T  15048 ccaa 15051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 55 - 241
Target Start/End: Complemental strand, 7389448 - 7389262
Alignment:
Q  55 aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggc 154  Q
    |||||| |||| ||| |||||||||||| |||||||| | | ||| |||  ||| ||||||||||||||   ||||| |||||||| |||||| ||| ||    
T  7389448 aaactcggcatctattttttctaagaaagcaactaagttgccccagacattaatgggtccgttatagtcatcccctttcttagtttcattctcgtctagc 7389349  T
Q  155 tcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacaca 241  Q
    || |  ||||||||| |||||| |||||| |||||| | ||||| |||||||||||||  || ||||||||||| ||||||||||||    
T  7389348 tccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgagaatgaccagcatgttctgcacacactttttccacaca 7389262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 368
Target Start/End: Complemental strand, 7389216 - 7389118
Alignment:
Q  271 gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagtt 368  Q
    |||||||||||||| ||||||||||||||||| |  |||||| || |||| | ||||| |||| |||||| ||| ||||| ||||||||||||||||||    
T  7389216 gcagaaaccacactgaaaagaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaggtaagctgctcaacctgttcaaaccttccagtt 7389118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 62 - 260
Target Start/End: Original strand, 48300790 - 48300988
Alignment:
Q  62 gcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatg 161  Q
    |||| ||| |||||||||||| |||||||| | | ||| ||| |||| ||||||| ||||||   ||||| ||||| || |||||||||| | || |  |    
T  48300790 gcatctattttttctaagaaagcaactaagttgccccagacatgaatgggtccgtcatagtcatcccctttcttagattcattctcatctagttccacag 48300889  T
Q  162 aatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccac 260  Q
    |||||||| |||||| |||||| |||||| | |||||||| ||||||||||  ||||||||||| || ||||||||||||| |||  ||| ||||||||    
T  48300890 aatcatcaacctttatgtttgggtgctgcacgagaatatcaagaatgaccagcatattctgcacgcactttttccacacatttatgggcatatgcccac 48300988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 368
Target Start/End: Original strand, 48301015 - 48301113
Alignment:
Q  271 gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggt-aactgttcaacttgttcaaaccttccagtt 368  Q
    |||||||||||||| ||||||||||||||||| | ||||||| || |||| | ||||| |||| |||| ||||| ||||| ||||||||||||||||||    
T  48301015 gcagaaaccacactgaaaagaatttgcagcttctgtgcaggtgttttagcaacttttgttaggaaggtaaactgctcaacctgttcaaaccttccagtt 48301113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University