View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_17 (Length: 395)
Name: NF3554_high_17
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 52934796 - 52935179
Alignment:
| Q |
7 |
cagagaagaattcaggaaagccaagaaaacactggttgaatcaccttctaaccacatcttaaaccaaccatgatgaatataataaataaagacatgaagc |
106 |
Q |
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| T |
52934796 |
cagagaagaattcatgaaagtcaagaaaacactggttgaatcaccttctaaccacatcttaaaccaaccatgatgaatataataaataaagacatgaagc |
52934895 |
T |
|
| Q |
107 |
tccgcctcataaataaacatatgaccaagattaactgcaaaacaacccataaaagtgcaacgacaatctctaaaaattcccccacaagaggcattattcc |
206 |
Q |
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| T |
52934896 |
tccgcctcaaaaataaacatatgaccaagattaactgcaaaacaacccataaaagtgcaacgacaatctctaaaaattcccccacgagaggcattattcc |
52934995 |
T |
|
| Q |
207 |
ccaaa-----------gtgttaacctttcaccagggttgtgttggtggcttccaataaattgtagcaatgtctttgaagcgatgatgttcaggagaaacg |
295 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52934996 |
ccaaaacggcccatctgtgttaacctttcaccagggttgtgttggtggcttccaataaattgtagcaatgtctttgaagcgatgatgttcaggagaaacg |
52935095 |
T |
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| Q |
296 |
agaaaagaatccataaaaccagaatcagagggcaaacaattgccattagaataattaccagacgttgcaattgttgatcctttc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52935096 |
agaaaagaatccataaaaccagaatcagagggcaaacaattgccattagaataattaccagacgttgcaattgttgatcctttc |
52935179 |
T |
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