View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_high_21 (Length: 338)

Name: NF3554_high_21
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_high_21
NF3554_high_21
[»] chr3 (4 HSPs)
chr3 (13-324)||(2504569-2504880)
chr3 (19-318)||(7331288-7331589)
chr3 (127-318)||(2641088-2641278)
chr3 (226-288)||(5031382-5031444)
[»] chr8 (1 HSPs)
chr8 (135-195)||(35439177-35439238)
[»] scaffold0325 (1 HSPs)
scaffold0325 (230-285)||(9845-9901)
[»] chr2 (1 HSPs)
chr2 (229-287)||(288848-288907)
[»] chr1 (3 HSPs)
chr1 (42-77)||(719490-719525)
chr1 (220-284)||(37187692-37187756)
chr1 (230-285)||(6505962-6506018)
[»] chr4 (2 HSPs)
chr4 (34-71)||(39142438-39142475)
chr4 (14-62)||(36467336-36467384)
[»] scaffold0341 (1 HSPs)
scaffold0341 (230-285)||(7641-7697)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 2504880 - 2504569
Alignment:
Q  13 aatataaatatcataaatagcccctaaattatatgaaatccgtcaatttaatccctaaaatgtatgaaagtctgtcaatttcgagactaaattaacagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504880 aatataaatatcataaatagcccctaaattatatgaaatccgtcaatttaatccctaaaatgtatgaaagtctgtcaatttcgagactaaattaacagat 2504781  T
Q  113 tttttatactcaatattgacatattttgtatttctttcttctattaatattattttcttcaaaacataatcaaaatagattttcattttctgcagaaaaa 212  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2504780 tttgtatacttaatattgacatattttgtatttctttcttctattaatattattttcttcaaaacatgatcaaaatagattttcattttctgcagaaaaa 2504681  T
Q  213 tgattttaaaaataaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacgggtactgaatatgtttttgcaaggaa 312  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504680 tgattttaaatataaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacgggtactgaatatgtttttgcaaggaa 2504581  T
Q  313 aatacatccaaa 324  Q
    ||||||||||||    
T  2504580 aatacatccaaa 2504569  T

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Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 7331288 - 7331589
Alignment:
Q  19 aatatcataaatagcccctaaattatatgaaatccgtcaatttaatccctaaaatgtatgaaagtctgtcaatttcgagactaaattaacagatttttta 118  Q
    ||||| |||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||| ||    
T  7331288 aatataataaatagcccctaaattatatgaaatttgtcactttaatccctaaaatatatgaaagtatgtcaatttcaagacaaaattaacagattttgta 7331387  T
Q  119 tactcaatattgacatattttgtatttcttt--cttctattaatattattttcttcaaaacataatcaaaatagattttcattttctgcagaaaaatgat 216  Q
    |||| || ||||||||||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7331388 tacttaacattgacatattttgtatttttttttcttctattaatattattttcttcaaaacctaatcaaaatagattttcattttctgcagaaaaatgat 7331487  T
Q  217 tttaaaaataaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacgggtactgaatatgtttttgcaaggaaaata 316  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||    
T  7331488 tttaaaaataaacttacacacaaacataaataaaacatgtaaaatgatttttaataatcttaaaaaagcgggtactaaatatgtttttgcaaggaaaata 7331587  T
Q  317 ca 318  Q
    ||    
T  7331588 ca 7331589  T

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Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 127 - 318
Target Start/End: Original strand, 2641088 - 2641278
Alignment:
Q  127 attgacatattttgtatttctttcttctattaatattattttcttcaaaacataatcaaaatagattttcattttctgcagaaaaatgattttaaaaata 226  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  2641088 attgacatatcttgtatttctttcttctactaatattttttcctttaaaacctaatcaaaatatatttttattttctgcagaaaaatgattttaaaaata 2641187  T
Q  227 aacttacacacaaacataactaaaacatgtaaaatga-ttttcaataatcttaaacaaacgggtactgaatatgtttttgcaaggaaaataca 318  Q
    | |||  |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||   |||||||||||||||||||||||||    
T  2641188 agctt--acacaaacataactaaaacatgtaaactgatttttaaataatcttaaacaaacgggtaacaaatatgtttttgcaaggaaaataca 2641278  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 5031382 - 5031444
Alignment:
Q  226 aaacttacacacaaacataactaaaacatgtaaaatgattttcaataatcttaaacaaacggg 288  Q
    |||||| ||||||||||||||||||||||  |||||||||||  ||||||||| || ||||||    
T  5031382 aaacttgcacacaaacataactaaaacatcaaaaatgattttttataatcttatactaacggg 5031444  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 35439238 - 35439177
Alignment:
Q  135 attttgtatttctttcttctattaatatta-ttttcttcaaaacataatcaaaatagatttt 195  Q
    ||||||||||||| ||||||||||| | || ||||||||||||  |||||||||||||||||    
T  35439238 attttgtatttctctcttctattaaaactaattttcttcaaaagttaatcaaaatagatttt 35439177  T

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Target: scaffold0325 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 9901 - 9845
Alignment:
Q  230 ttacacacaaacataactaaaacatgtaaaatgattttcaata-atcttaaacaaac 285  Q
    ||||||||||||| |||||||||||| ||||||||||| || | |||||||||||||    
T  9901 ttacacacaaacacaactaaaacatgaaaaatgatttttaaaatatcttaaacaaac 9845  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 288907 - 288848
Alignment:
Q  229 cttacacacaaacataactaaaacatgtaaaatga-ttttcaataatcttaaacaaacgg 287  Q
    ||||||||||||||||||||||| ||  ||||||| ||||||| |||||||||| |||||    
T  288907 cttacacacaaacataactaaaagatcaaaaatgatttttcaaaaatcttaaactaacgg 288848  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 719525 - 719490
Alignment:
Q  42 tatatgaaatccgtcaatttaatccctaaaatgtat 77  Q
    ||||||||||||| ||||||||||||||||||||||    
T  719525 tatatgaaatccgacaatttaatccctaaaatgtat 719490  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 37187692 - 37187756
Alignment:
Q  220 aaaaataaacttacacacaaacataactaaaacatgtaaaatg-attttcaataatcttaaacaaa 284  Q
    ||||| |||||||||||||| ||||||||||||| | |||||| ||||| ||| ||||||||||||    
T  37187692 aaaaagaaacttacacacaatcataactaaaacaag-aaaatgaatttttaattatcttaaacaaa 37187756  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 6506018 - 6505962
Alignment:
Q  230 ttacacacaaacataactaaaacatgtaaaatga-ttttcaataatcttaaacaaac 285  Q
    |||||||||||||||||||||||||  ||||| | ||||  ||||||||||||||||    
T  6506018 ttacacacaaacataactaaaacataaaaaataattttttgataatcttaaacaaac 6505962  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 39142475 - 39142438
Alignment:
Q  34 ccctaaattatatgaaatccgtcaatttaatccctaaa 71  Q
    |||||||  |||||||||||||||||||||||||||||    
T  39142475 ccctaaagcatatgaaatccgtcaatttaatccctaaa 39142438  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 36467336 - 36467384
Alignment:
Q  14 atataaatatcataaatagcccctaaattatatgaaatccgtcaattta 62  Q
    |||||||||| |||| ||| ||||||| ||||| |||||||||||||||    
T  36467336 atataaatataataactagtccctaaagtatataaaatccgtcaattta 36467384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 7697 - 7641
Alignment:
Q  230 ttacacacaaacataactaaaacatgtaaaatga-ttttcaataatcttaaacaaac 285  Q
    |||||||||||||||||||||||||  ||||| | ||||  ||||||||||||||||    
T  7697 ttacacacaaacataactaaaacataaaaaataattttttgataatcttaaacaaac 7641  T

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