View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_28 (Length: 312)
Name: NF3554_high_28
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 48446490 - 48446778
Alignment:
| Q |
17 |
cagagagagcgaggtttcgctgtgtgtatggtcacttgcatttcattattttattagtagtcattttgcatctgaatctcatttcagtataccaattgtc |
116 |
Q |
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| T |
48446490 |
cagagagagcgaggtttcgctgtgtgtgtggtcacttgcatttcattattttattagtagtcattttgcatctgaatctcatctcagtataccaattgtc |
48446589 |
T |
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| Q |
117 |
acactatatataaatnnnnnnnggagagagacacaaacaagattctccaatatacacaccattggttaaaaccttagacaccattgtcggagcttgatca |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48446590 |
acactatatataaataaaaaa-ggagagagacacaaacaagattctccaatatacacaccattggttaaaaccttagacaccattgtcggagcttgatca |
48446688 |
T |
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| Q |
217 |
tattgttatttcatctgtgcatgttctgttcttttggggagatacttacttctgttctgttacattcattcatttcttgccttcttctca |
306 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
48446689 |
tattgttatttcatctgagcatgttctgttcttttggggagatacttacttctgttcttttacattcattcatttcttgcctccttctca |
48446778 |
T |
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