View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3554_high_32 (Length: 292)

Name: NF3554_high_32
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3554_high_32
NF3554_high_32
[»] chr6 (1 HSPs)
chr6 (13-292)||(28994330-28994609)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 28994330 - 28994609
Alignment:
Q  13 aaaatataaataattttccaacatacataatttagttgcaaaatctttggtacatgtagaacaaacaaaaacgatttttatagataaatgttaatgatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994330 aaaatataaataattttccaacatacataatttagttgcaaaatctttggtacatgtagaacaaacaaaaacgatttttatagataaatgttaatgatta 28994429  T
Q  113 atttggtaggaagaggaaaatgttattatcatatattgagcttagtagacatatataactatatttttaaataaagtttgagaagaggaaattttttatt 212  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994430 atttgttagaaagaggaaaatgttattatcatatattgagctttgtagacatatataactatatttttaaataaagtttgagaagaggaaattttttatt 28994529  T
Q  213 aagttgaatgcaactaatagttattttacagtagtgcagaataatcaaccaaaatcttgcaagagttgataacatgattt 292  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28994530 aagttgaatgcaactaatagttattttacaatagtgcagaaaaatcaaccaaaatcttgcaagagttgataacatgattt 28994609  T

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