View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3554_high_36 (Length: 268)
Name: NF3554_high_36
Description: NF3554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3554_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 28994676 - 28994933
Alignment:
| Q |
3 |
ttaaaaagcaaatgtcatgttgcaggaaaatcatatgcatt-------ctcgtcattaattaaattaactaccataacatatgaactcataacttagata |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||| |
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| T |
28994676 |
ttaaaaagcaaatgtcatgttgcaggaaaatcatatgcattatttcttctcgtcattaattaa-ttaattaccatcacatatgaactcataacttagata |
28994774 |
T |
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| Q |
96 |
aatataatgttgatgatatacaaagctagctaccaaattaagggccttttgttacatattataaaaaattaattttgacaatcaataatttatagatttg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28994775 |
aatataatgttgatgatatacaaagctagctaccaaattaagggccttttgttacatattataaaaaattaattttgacaatcaataatttatagatttg |
28994874 |
T |
|
| Q |
196 |
tttttatagagttttagagagnnnnnnntatatatgttgttttgtgttcgtttgttgat |
254 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28994875 |
tttttatagagttttagagaaaaaaaaatatatatgttgttttgtgttcgtttgttgat |
28994933 |
T |
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